PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036388001
Common NameLOC100258486, VIT_18s0001g05850
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 178aa    MW: 20093.8 Da    PI: 5.7141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-181263156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       + y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g+
  GSVIVT01036388001 12 PSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHLKGH 63
                       57*****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-121263IPR001471AP2/ERF domain
CDDcd000181.36E-191272No hitNo description
SMARTSM003801.0E-341376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-311371IPR001471AP2/ERF domain
PROSITE profilePS5103222.6421370IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-211371IPR016177DNA-binding domain
PRINTSPR003672.0E-121425IPR001471AP2/ERF domain
PRINTSPR003672.0E-125272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKNRADPHAP IPSYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEAPEMAA AAYDVAALHL  60
KGHRAELNFP ELAPSFPRPT SFSPEDVQFA SAQAALHIKS IASGDVSARS PSRVGMSSVP  120
TRVGLSASEI REINEWPMDS PRMWMMELRE EPLVLSDEIF ELSEWEEVEN QYSIWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-161470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-161470663ATERF1
3gcc_A3e-161470663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.259660.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695810.0AM469581.1 Vitis vinifera contig VV78X027004.57, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275853.11e-126PREDICTED: ethylene-responsive transcription factor ERF022
TrEMBLA0A438HPD41e-125A0A438HPD4_VITVI; Ethylene-responsive transcription factor ERF021
TrEMBLD7TLF21e-125D7TLF2_VITVI; Uncharacterized protein
STRINGVIT_18s0001g05850.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-41ERF family protein