PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036389001
Common NameLOC100253356, VIT_18s0001g05890, VITISV_038046
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 183aa    MW: 19846 Da    PI: 4.6832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-201768156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       sgy+GVr ++ +g+Wv+eIr+p   g ++r++lg+f t+e+Aa a++aa++ ++g+
  GSVIVT01036389001 17 SGYRGVRKRR-WGKWVSEIREP---GTKTRIWLGSFETPEMAAMAYDAAALHFRGH 68
                       89*****887.**********8...325***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-221776IPR016177DNA-binding domain
CDDcd000181.94E-201777No hitNo description
PfamPF008473.7E-131768IPR001471AP2/ERF domain
PROSITE profilePS5103223.1821875IPR001471AP2/ERF domain
SMARTSM003805.9E-371881IPR001471AP2/ERF domain
PRINTSPR003673.1E-101930IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-311976IPR001471AP2/ERF domain
PRINTSPR003673.1E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEDDQGHSHG GAVASSSGYR GVRKRRWGKW VSEIREPGTK TRIWLGSFET PEMAAMAYDA  60
AALHFRGHGA KLNFPELAPN LPRPASSAAE HIRLAAQEAA LRLTRAPESA GQSGSGSGLG  120
PVRVGLSPSQ IQAINDSTLD SPRNWTELAQ TVFLDESMIM SCELEISDWD EEEVEVNESL  180
WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161475163ATERF1
3gcc_A2e-161475163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695810.0AM469581.1 Vitis vinifera contig VV78X027004.57, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645899.11e-131PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-56ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A438DCP11e-130A0A438DCP1_VITVI; Ethylene-responsive transcription factor ERF021
TrEMBLA5BSM21e-130A5BSM2_VITVI; Uncharacterized protein
STRINGVIT_18s0001g05890.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-46ERF family protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]