PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036447001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family RAV
Protein Properties Length: 250aa    MW: 28279.7 Da    PI: 9.1453
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036447001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79.3e-1161101147
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                        s+ykGV   + +grW A+I++      ++r++lg+f  + eAaka++
  GSVIVT01036447001  61 SKYKGVVPQP-NGRWGAQIYEK-----HRRIWLGTFNEEGEAAKAYD 101
                        89****9888.8*********3.....5**********66******8 PP
2B368.21.1e-211542183296
                        --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        ++  l +ed  g+ W+++++++++s++yvltkGW++Fvk+++Lk+gD+v F+++  s+++l++ +
  GSVIVT01036447001 154 KGGLLNFEDNGGKIWRFRYSFWNSSQSYVLTKGWRRFVKEKNLKAGDIVSFHRSTGSDKRLFIEW 218
                        455899**********************************************8877998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-1161102IPR016177DNA-binding domain
CDDcd000184.64E-1761101No hitNo description
PfamPF008471.9E-661101IPR001471AP2/ERF domain
PROSITE profilePS5103214.24962101IPR001471AP2/ERF domain
SMARTSM003802.9E-1162116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1262101IPR001471AP2/ERF domain
SMARTSM010198.3E-7107222IPR003340B3 DNA binding domain
CDDcd100175.73E-16142207No hitNo description
Gene3DG3DSA:2.40.330.101.5E-24147228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-19151217IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-19153219IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942158222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPMYMAMFEA IQESLPVCPS TTESALVTKM SDYSWRVGGT SGISDSENGV GAVYLRKLTS  60
SKYKGVVPQP NGRWGAQIYE KHRRIWLGTF NEEGEAAKAY DGIQDDIETT FLNSHSKAEI  120
VDMLRKHTYN DELEQSAHNY GSKESGADVM DSSKGGLLNF EDNGGKIWRF RYSFWNSSQS  180
YVLTKGWRRF VKEKNLKAGD IVSFHRSTGS DKRLFIEWEQ RDSSRKPSMK QVESGQMVRL  240
FGVNLFSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3115222448120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4601001e-163AM460100.2 Vitis vinifera contig VV78X006745.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279732.11e-148PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9LS061e-72RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLF6GVQ71e-147F6GVQ7_VITVI; Uncharacterized protein
STRINGVIT_14s0083g00130.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.14e-75ethylene response DNA binding factor 3