PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01036549001

Common Name

VFUL-L, VIT_14s0083g01030

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28432.4 Da PI: 9.9121

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01036549001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.6	9.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss GSVIVT01036549001 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	104.7	1.1e-34	88	174	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ ++ kL ++ie Lqr++Rh++GedL++Lsl+eLq+LeqqL+++lk+iR++Kn+l++e+i+elqkkek+l e+n+aL kk++e GSVIVT01036549001 88 QGNWSMDYPKLTARIEVLQRNLRHFVGEDLDPLSLRELQNLEQQLDTALKRIRTRKNQLMHESISELQKKEKSLVEQNNALAKKVKE 174 569*********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.198	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.87E-42	2	74	No hit	No description
SuperFamily	SSF55455	1.31E-33	2	88	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-31	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	9.8E-30	88	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.573	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD 60 SSMERILERY ERYSLSERQL LSTDPDPQGN WSMDYPKLTA RIEVLQRNLR HFVGEDLDPL 120 SLRELQNLEQ QLDTALKRIR TRKNQLMHES ISELQKKEKS LVEQNNALAK KVKEKEKVEQ 180 NNRAQWEQQN NIGQNSSAYV VPPPPLQLPS LTIGGSFVGR AVEEDGAEAR PSPNTLMPPW 240 MLRHVNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6byy_A	3e-22	1	74	1	73	MEF2 CHIMERA
6byy_B	3e-22	1	74	1	73	MEF2 CHIMERA
6byy_C	3e-22	1	74	1	73	MEF2 CHIMERA
6byy_D	3e-22	1	74	1	73	MEF2 CHIMERA
6bz1_A	3e-22	1	74	1	73	MEF2 CHIMERA
6bz1_B	3e-22	1	74	1	73	MEF2 CHIMERA
6bz1_C	3e-22	1	74	1	73	MEF2 CHIMERA
6bz1_D	3e-22	1	74	1	73	MEF2 CHIMERA
6c9l_A	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	3e-22	1	74	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.129	1e-127	fruit\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269\|PubMed:15247405}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY538747	0.0	AY538747.1 Vitis vinifera FUL-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010660493.1	0.0	PREDICTED: FUL-like protein isoform X1
Swissprot	D7SMN6	0.0	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A2I4EBJ6	1e-125	A0A2I4EBJ6_JUGRE; truncated transcription factor CAULIFLOWER A-like
STRING	VIT_14s0083g01030.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	6e-91	AGAMOUS-like 8

Link Out ? help Back to Top
Phytozome	GSVIVT01036549001
Entrez Gene	100232953

Publications ? help Back to Top
Calonje M,Cubas P,Martínez-Zapater JM,Carmona MJ Floral meristem identity genes are expressed during tendril development in grapevine. Plant Physiol., 2004. 135(3): p. 1491-501 [PMID:15247405] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]