PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036552001
Common NameLOC100248088, VIT_14s0083g01060
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 248aa    MW: 28371.8 Da    PI: 6.717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036552001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding636e-201764148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ll ++v  +G g+W+++ar+ g++R++k+c++rw +yl
  GSVIVT01036552001 17 KGPWTPEEDKLLSEYVSSHGEGRWSSVARCSGLNRSGKSCRLRWVNYL 64
                       79********************************************97 PP
2Myb_DNA-binding50.64.4e-1670114147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg  Tt E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  GSVIVT01036552001  70 RGHITTMEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 114
                        6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4971268IPR017930Myb domain
SuperFamilySSF466893.29E-3114111IPR009057Homeodomain-like
SMARTSM007174.5E-171666IPR001005SANT/Myb domain
PfamPF002494.2E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-231871IPR009057Homeodomain-like
CDDcd001679.89E-131964No hitNo description
SMARTSM007171.9E-1369117IPR001005SANT/Myb domain
PROSITE profilePS5129418.44869119IPR017930Myb domain
PfamPF002493.2E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2272118IPR009057Homeodomain-like
CDDcd001671.69E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVGLMGWGSV PVQGWRKGPW TPEEDKLLSE YVSSHGEGRW SSVARCSGLN RSGKSCRLRW  60
VNYLRPGLKR GHITTMEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNY WRTHFKKNQK  120
QQKPKAQQPL EPKLQQQQQQ QQEDHEIKLE NGKMGEAQGK QEAISMEDQC LPVMYQEIDD  180
HQARQQVASM YPTILEDLCL PVTYQDHLQG EDQGLWGGLW NLDDTIDHTI SGGGNSSQNY  240
YNGGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24171177106B-MYB
1h8a_C1e-231711727126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4561030.0AM456103.1 Vitis vinifera contig VV78X003633.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278098.20.0PREDICTED: transcription factor MYB59
TrEMBLD7SMN90.0D7SMN9_VITVI; Uncharacterized protein
STRINGVIT_14s0083g01060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.15e-68myb domain protein 121