PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036649001
Common NameLOC100242879, VIT_13s0084g00660
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 470aa    MW: 51594.5 Da    PI: 6.4386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036649001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09182224345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  GSVIVT01036649001 182 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 224
                        56889*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-7174227No hitNo description
SMARTSM003381.4E-7180243IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.461182226IPR004827Basic-leucine zipper domain
PfamPF001708.5E-7183225IPR004827Basic-leucine zipper domain
CDDcd147085.84E-22184236No hitNo description
SuperFamilySSF579596.06E-7184227No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141442.1E-33266341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGSIAVRAGA DDEKEAASGM PSFDPQLPVS NALCTEGNSI HSYRVSDFGT LEQSIGFHLE  60
DAVDLSGSTA FNSTKPSGRA VTSDPLHSVT FDKSQNSFDI NPSAARVESQ RLPLQKGQQS  120
NLVSISSGSV ENWGESAMAD ASPRTDISTD VDTDDKVQRF ERGQPASNMA SDSSDRSKDK  180
NDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRMKLTQL EQELQRARQQ GIFISSSGDQ  240
AHSMSGNGAM AFDVEYARWL EEQNRQINEL RSAVNSHASD AELRVIVDNI MAHYDDIFRL  300
KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VNQLEPLTEQ QLLGIGNLQQ  360
SSQQAEDALS QGMEALQQSL AETLSSGSLG SSGSSGNVAN YMGQMAMAMG KLGTLEGFIR  420
QADNLRQQTL QQMHRILTTR QSARALLAIH DYFSRLRALS SLWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13120.0bud| cell culture| flower| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263159.20.0PREDICTED: transcription factor TGA2.2 isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLD7TX810.0D7TX81_VITVI; Uncharacterized protein
STRINGVIT_13s0084g00660.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-152TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]