PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01036911001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

BES1

Protein Properties

Length: 613aa MW: 69763.5 Da PI: 5.4457

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01036911001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	154.6	7.2e-48	8	150	4	142
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++ p ++ ++ +s+es+l+ GSVIVT01036911001 8 GKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPPPS----QMATFPVRSVESPLS 95 899**************************************************************776665....788899999999999 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142 ssl++++ + ++ + ++++ ++++sp+slds+ +++ +s++p++s GSVIVT01036911001 96 aSSLRNCSAKGSLDCQPSVLRIDESLSPASLDSVVVSERdtksekyTSTSPISSA 150 899******************************99886554444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-48	7	151	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.08E-166	171	605	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.5E-178	174	605	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	4.6E-87	196	568	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	211	225	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	232	250	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	254	275	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	347	369	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	420	439	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	454	470	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	471	482	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	489	512	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.5E-59	527	549	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MKTVWKNGKK EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR 60 EAGWTVEADG TTYRQSPPPS QMATFPVRSV ESPLSASSLR NCSAKGSLDC QPSVLRIDES 120 LSPASLDSVV VSERDTKSEK YTSTSPISSA ECLEADQLMR DVRSGEHEND FTGTPYVPVY 180 VMLATGVINN FCQLVDPDGI RQELSHMKSL HTDGVVVDCW WGIVEGWSPQ KYEWSGYREL 240 FNIIREFKLK LQVVMAFHEY GGNGSGDVMI SLPQWVLEIG KENQDIFFTD REGRRNTECL 300 SWAIDKERVL KGRTGIEVYF DFMRSFRTEF DDLFAEGIIS AVEIGLGASG ELKYPSFSER 360 MGWAYPGIGE FQCYDKYSQQ NLRKAAKLRG HSFWARGPDN AGQYNSRPHE TGFFCERGDY 420 DSYYGRFFLH WYAQSLIDHA DNVLSLATLA FEETQLIVKV PAVYWWYRTA SHAAELTAGY 480 YNPTNQDGYS PVFEVLKKHS VTMKFVCSGL QITCQENDDA FADPEGLSWQ VLNSAWDRGL 540 TVAGENAVPC YDREGYMRIA EIAKPRNDPD RRHLSFFVYQ QPSPLVERTI WFSELDYFIK 600 CMHGEIAGYL DP*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MKTVWKNGKK EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR  60
EAGWTVEADG TTYRQSPPPS QMATFPVRSV ESPLSASSLR NCSAKGSLDC QPSVLRIDES  120
LSPASLDSVV VSERDTKSEK YTSTSPISSA ECLEADQLMR DVRSGEHEND FTGTPYVPVY  180
VMLATGVINN FCQLVDPDGI RQELSHMKSL HTDGVVVDCW WGIVEGWSPQ KYEWSGYREL  240
FNIIREFKLK LQVVMAFHEY GGNGSGDVMI SLPQWVLEIG KENQDIFFTD REGRRNTECL  300
SWAIDKERVL KGRTGIEVYF DFMRSFRTEF DDLFAEGIIS AVEIGLGASG ELKYPSFSER  360
MGWAYPGIGE FQCYDKYSQQ NLRKAAKLRG HSFWARGPDN AGQYNSRPHE TGFFCERGDY  420
DSYYGRFFLH WYAQSLIDHA DNVLSLATLA FEETQLIVKV PAVYWWYRTA SHAAELTAGY  480
YNPTNQDGYS PVFEVLKKHS VTMKFVCSGL QITCQENDDA FADPEGLSWQ VLNSAWDRGL  540
TVAGENAVPC YDREGYMRIA EIAKPRNDPD RRHLSFFVYQ QPSPLVERTI WFSELDYFIK  600
CMHGEIAGYL DP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-129	176	605	11	444	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.4579	0.0	flower\| fruit\| leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270680.1	0.0	PREDICTED: beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	F6HJ37	0.0	F6HJ37_VITVI; Beta-amylase
STRING	VIT_02s0087g00440.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9765	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	GSVIVT01036911001

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]