PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036939001
Common NameLOC100259610, VIT_02s0087g00140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 213aa    MW: 25898.9 Da    PI: 6.5492
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036939001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.14.7e-131453886
           trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                       m+e g++r+p qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  GSVIVT01036939001  1 MKEMGYKRTPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 45
                       799***********************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3125IPR017930Myb domain
PfamPF138371.7E-12147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKEMGYKRTP DQCKCKWKNL VNRYKGKETS DPENGRQCPF FEELHAIFEE RAKNMQRRLL  60
ESEAGSMQSR KRARRISAGD HSSDEFSEDE DDDEDDSEEE RLPRSSNPRK RKAERERPSA  120
SSIPEMLKEF FQQQQRMEMQ WREAMERRAQ ERQMFEQEWR QSMEKLERER LMVEQAWRER  180
EEQRRAREES RAEKRDVLLT TLLNKLIHEN HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4883121e-156AM488312.2 Vitis vinifera contig VV78X082303.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644782.11e-119PREDICTED: trihelix transcription factor GT-3b
TrEMBLA0A438IZD01e-118A0A438IZD0_VITVI; Trihelix transcription factor GT-3b
TrEMBLF6HJ541e-118F6HJ54_VITVI; Uncharacterized protein
STRINGVIT_02s0087g00140.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-13Trihelix family protein