PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037267001
Common NameVITISV_006086
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SRS
Protein Properties Length: 278aa    MW: 29331.6 Da    PI: 8.9975
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037267001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.71.5e-68962553154
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                        +g+++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + +  +  a +s +++ +k++r   +++++++s+t++s++
  GSVIVT01037267001  96 AGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMVS-VTPGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNT 185
                        6889*********************************************976655.45677777788889999975.88899999******* PP

             DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        +++++++tss          lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqGle+
  GSVIVT01037267001 186 TPPRSFDTSSshqdasfkeaLPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGLET 255
                        ********999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.2E-6398254IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-27100142IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-30206253IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGMVGLRDVF VVAPASSFHH NNQHDPIISD PHAINGSNAA TALGHRSKGG GIQFWQNQQT  60
QHANYLKKPM ILDHNSSSNL LSCGVGGVGA SGPTTAGGTT CQDCGNQAKK DCSHRRCRTC  120
CKSRGFDCAT HVKSTWVPAA RRRERQLMVS VTPGAGSSGS TSGAKKPRLI TSQTTTTSHT  180
STSNTTPPRS FDTSSSHQDA SFKEALPGQV RAPAVFKCVR VTAVDDGEDE YAYQAVVKIG  240
GHVFKGFLYD QGLETRDGFP NISELHLGGG SGTTVTQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.126010.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4683660.0AM468366.2 Vitis vinifera contig VV78X135459.20, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651514.21e-172PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-83LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA5BRG11e-171A5BRG1_VITVI; Uncharacterized protein (Fragment)
TrEMBLF6HA241e-171F6HA24_VITVI; Uncharacterized protein
STRINGVIT_06s0009g03450.t011e-172(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-74Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]