PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01037434001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 231aa MW: 26739 Da PI: 10.4005

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01037434001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.2	2.1e-14	160	204	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r +rk+kNRe+A rsR+RK+a+ eL kv Le+eN +Lkke GSVIVT01037434001 160 RRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENVRLKKEK 204 689***************************************884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-11	153	203	No hit	No description
SMART	SM00338	3.3E-11	156	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	158	203	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.37E-17	160	205	No hit	No description
Pfam	PF00170	1.2E-11	160	204	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.81E-10	160	205	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MNFLFFIFGK QLAKYLYFYK TLKNYFFFFN LKTIFKTKYK KTWLKWVISL QRQASLTIAQ 60 ALSEKTVEEV WSDIQQGEKK KCGDDIKGQV REPTLGEMKL EDFLVKAAVF VKGLDIVGVV 120 TPPNFPQQMG LSPSPSVGTL SDTSIPGHER DASMEKTVER RLKRKIKNRE SAARSRARKQ 180 AYHNELVSKV SRLEEENVRL KKEKEVEKMF PCESSTEPKY QLRRTSSVTF *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12943	0.0	fruit\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM474809	0.0	AM474809.2 Vitis vinifera contig VV78X005656.20, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651598.1	1e-131	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_010651599.1	1e-131	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	2e-48	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	F6H9Y6	1e-129	F6H9Y6_VITVI; Uncharacterized protein
STRING	VIT_06s0009g01790.t01	1e-130	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-51	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	GSVIVT01037434001

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]