PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01037533001

Common Name

LOC100256505, VIT_06s0009g00880

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

YABBY

Protein Properties

Length: 184aa MW: 20383.2 Da PI: 8.1681

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01037533001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.5	4.9e-68	2	157	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +++ ++e+vCyv+CnfCntilavsvP tslf++vtvrCGhC++llsvn+ q++++++ ++++++l+ + +e++ s GSVIVT01037533001 2 SLDITPERVCYVHCNFCNTILAVSVPCTSLFTIVTVRCGHCANLLSVNMGALLQTVPTQDL-------------QSQKQQLSCGDPSEDCGS 80 667899******************************************99999998883.............333444444444444433 PP YABBY 94 tsvss.eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ + ++ e+ ++e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl GSVIVT01037533001 81 SSKCNkFSAFESAEHEQPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 157 3333302234677889999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-75	6	157	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.2E-5	106	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSLDITPERV CYVHCNFCNT ILAVSVPCTS LFTIVTVRCG HCANLLSVNM GALLQTVPTQ 60 DLQSQKQQLS CGDPSEDCGS SSKCNKFSAF ESAEHEQPRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDITHREAF STAAKNWAHF PHIHFGLKLD GNKQGKLDQA FAGEGPHKAH 180 GFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12236	1e-133	bud\| fruit\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ384702	0.0	FQ384702.1 Vitis vinifera clone SS0AAG11YI03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277937.1	1e-137	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-84	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D7T1M7	1e-136	D7T1M7_VITVI; Uncharacterized protein
STRING	VIT_06s0009g00880.t01	1e-136	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-87	YABBY family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01037533001
Entrez Gene	100256505

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]