PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037853001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 205aa    MW: 22742 Da    PI: 7.1252
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037853001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.74.9e-302104198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ ++ +++++pe +r+++++sl++eA+ r+ +Pv Gavg+++++++++
  GSVIVT01037853001   2 SCSGCRVLRKGCSENCMLRQCLewidsPEAQANATIFVAKFFGRADLMAFISTVPERQRPCLFQSLLFEACGRTVNPVFGAVGLLWTGNWHV 93 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallk 98 
                        +q+++e++l++
  GSVIVT01037853001  94 CQSAVETVLRG 104
                        *****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7961107IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSCSGCRVLR KGCSENCMLR QCLEWIDSPE AQANATIFVA KFFGRADLMA FISTVPERQR  60
PCLFQSLLFE ACGRTVNPVF GAVGLLWTGN WHVCQSAVET VLRGGELAPL PEFLDLEGVE  120
TPVSEAYLAE EYLSKPGDTD YRLTDVNLRP KHGSATGMKI EETEERRPRT SPDDSATMTN  180
CNKLRSYYKT IKSMKLRGSP TTTK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4302971e-180AM430297.2 Vitis vinifera contig VV78X120137.25, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264010.11e-132PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN238e-65LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A438CU821e-130A0A438CU82_VITVI; LOB domain-containing protein 38
TrEMBLF6H6651e-130F6H665_VITVI; Uncharacterized protein
STRINGVIT_03s0091g00670.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-67LOB domain-containing protein 38