PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037903001
Common NameLOC100249018, VIT_03s0091g00210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 203aa    MW: 21404.9 Da    PI: 9.6689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037903001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00062991311855
                        HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++  L++l+ +      +K + a++L +A+ YI+ Lq
  GSVIVT01037903001  99 ERITALQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 131
                        6788888988887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.90281130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.007490136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-491135No hitNo description
SuperFamilySSF474591.57E-1091143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-795137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLCFGGYQSE VGFAEPTKTP QKSGVTCSDS SSASSTNNTN INKASKSNKK RNGSGNMSVP  60
TSSGLAKAPA GGQRNSKKTK SENPTSGGHV KVKKEKLGER ITALQQLVSP FGKTDTASVL  120
HEAMGYIRFL QDQVQVLCSP YLQTLPSSAH MSEGGENGEE KSSKDLRSRG LCLVPVECTE  180
HVANNNGADY WSPAMANTSS KK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.18601e-177stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4529793e-79AM452979.2 Vitis vinifera contig VV78X015167.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269988.11e-148PREDICTED: transcription factor bHLH113 isoform X3
SwissprotQ9LT671e-52BH113_ARATH; Transcription factor bHLH113
TrEMBLF6H6A31e-146F6H6A3_VITVI; Uncharacterized protein
STRINGVIT_03s0091g00210.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.17e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]