PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01038591001

Common Name

LOC100264143, VIT_16s0098g01420

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Dof

Protein Properties

Length: 246aa MW: 26813.7 Da PI: 8.4513

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01038591001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ GSVIVT01038591001 31 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 91 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	23	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-34	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDTAQWPQGI GVVKPMESSG PVAERRARPQ KDQALNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS TSSSSSSSSP ASSKKLLPDH LITRFPSSAS 120 QNPKIHEGQD LNLAFPPPPE DYNNSISEFA DLGLGSFMPM SVSDSNSIYS SGFPLQEFKP 180 TLNFSLDGFQ SGYGSLQGVQ ESGARLLFPL EDLKQVSNTT EFEQSRGVQG DSAGYWNGML 240 GGGSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.18093	0.0	inflorescence\| pedicel

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM486183	0.0	AM486183.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X166878.4, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275610.1	1e-161	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
Swissprot	Q8LAP8	2e-56	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A438BU51	1e-159	A0A438BU51_VITVI; Dof zinc finger protein DOF4.6
TrEMBL	F6H7D0	1e-159	F6H7D0_VITVI; Uncharacterized protein
STRING	VIT_16s0098g01420.t01	1e-160	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01038591001
Entrez Gene	100264143

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]