PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.1758_g
Common NameCOCSUDRAFT_60947
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family NF-YA
Protein Properties Length: 277aa    MW: 29098.2 Da    PI: 8.2017
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.1758_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.72.5e-30107163158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy+ Il+RRq+Rak+e+e+kl +k+r+pylh+SRh+hA rR Rg gGrF
  Genemark1.1758_g 107 EEPVYVNAKQYHCILRRRQQRAKAEAENKL-IKTRRPYLHQSRHNHATRRIRGAGGRF 163
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.5E-34105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.937106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-26108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-22109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-22140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MATVSTPAVS PAGGVRTCMG SGANAWVPAK MRAAEGGLGY EAGMLQGGAQ AAVSGVVAAP  60
EYYYPQGPYQ YDPYYGSLMY NQPVAAAAPT VAGGQARLAL PTEIMEEEPV YVNAKQYHCI  120
LRRRQQRAKA EAENKLIKTR RPYLHQSRHN HATRRIRGAG GRFLTAQEAR ALELSGEISG  180
NSNSGAASSQ PSDSQADSRN QQPNGPADSV FLPAAPDADR DGMHASDSAP SPSQGEATMQ  240
QQASQQNHMA QSVGVQQTLD QAMNSQLAAG AAVRVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21107168263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650490.10.0hypothetical protein COCSUDRAFT_60947
TrEMBLI0Z5M70.0I0Z5M7_COCSC; Uncharacterized protein
STRINGXP_005650490.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP954144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.16e-25nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]