PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.2377_g
Common NameCOCSUDRAFT_61587
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 134aa    MW: 14079.5 Da    PI: 6.7286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.2377_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-082650227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      k + C+++++ G+C+ G++C FaH+p
  Genemark1.2377_g 26 KSKMCSYHLQ-GHCSKGSSCLFAHSP 50
                      6678**9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0842451IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-42450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-72555IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-102557IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-53050IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.91E-7101130No hitNo description
Gene3DG3DSA:3.30.40.101.4E-6106130IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5169810.997107133IPR003613U box domain
PfamPF045641.1E-5108130IPR003613U box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MQQHKHGSST TGSQPAERAS SGHQSKSKMC SYHLQGHCSK GSSCLFAHSP HELQHPPAPT  60
VRNGASAAAT HSTPSYEARE NGHVNARELK GNMAAPPVNA EPFEDDEAPD SFCCPITHEI  120
LRDPVVACDG GAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649912.11e-94hypothetical protein COCSUDRAFT_61587
TrEMBLI0Z3Z93e-93I0Z3Z9_COCSC; Uncharacterized protein
STRINGXP_005649912.15e-94(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]