PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2425_g

Common Name

COCSUDRAFT_61635

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 2492aa MW: 266834 Da PI: 6.279

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2425_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.8e-09	1564	1585	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++ r G CkyGd C+F+H+p Genemark1.2425_g 1564 PCRDWVR-GRCKYGDECRFSHPP 1585 8****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.408	1560	1586	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-5	1561	1585	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-6	1564	1585	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	1564	1585	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2492 aa Download sequence Send to blast
MPIKARLLYH EAATLDPAES TQNNRQRLDL LQEALDSGQT ASDLCPASLS CAALRATMVT 60 NALRIQDQVQ AWVKEGRWQE LANEKREVLL HMQDVLRSCH TLLQTTQIPM NGVVNLLQHI 120 LKPHHEELKA WANQLLLSKT ALLEALQQQV EKQQAMADLI KRIKPQDGCA ARSAGPMASV 180 PQPSLGPRQD GPASQASLSM DRDFDYGKDP TALNRRKARK ANERRNELTM QERFQDVKDF 240 WLKQGPTRRR QLLKVPIRRL LQVIQREHGQ QIAEELEHGL SLLREYSNMR ACFWICPFCP 300 GKEGAPRQFT SAKDFLTHVD ACHEGVQLSE DGLPCICNSC NCQVVGDHYR STAETGGVLC 360 LRCHHLELVG GGQAKLQSYE RIASQDPASL HCGWEDDSDF FSSRGSFGSL DEEYVRDSLA 420 ALGSRLPPGA LPPFGTAEAS QWFDDWNQSM EAQMRSRLPF GPDGQQVLQP EQMPPGSMAL 480 GHPVFAPVQL DAGSSGAQQA AEQVPHLNGG VSLPPRGTRR SRGESGAEGD GGSSAAATDG 540 SGASHPWGVN GPSMNSGEGQ TDGSSPWRSL FPKQLELWRN AYSERAAGAQ NGGSSTPMLS 600 YADRVRKAGF PKPEAAPLPP ALTNGTAPHA AASSMIAMQP MPWLPASGAP LGMIHAPYPD 660 PASLGAMLPM EAAQIGPPGS YEGQLVSHIM QYINNLWRVD PSNFAATLNM ICMRAPALMQ 720 RMMDHELAAN AAVDERFAAQ QQGAAGTAAA APSQPALPPS SKPLQHPHEL EAALSQLPMG 780 DLNTLLRYIC QYMPMGPCPG VVPPTGPPLS DGTSSDGGDW DEEQVCPPLF GFASPSDADQ 840 LDNIADDVLG AQGAEEDTRL IRAQEEPELE DNTAEAGEPS LVVQPWWMNH LLEARGADTN 900 GTPGGTTTGG IAEADVGLRL LRWAYGAVVN TTAAAVMERR RELLSGKTAD AALLGLYEDI 960 ARVWRRLNEL GSKKSRLQQL RRGSERAIRE VRELEERGSA SLRAQAAQYV EALLPPSEAA 1020 QGQPCAPSAV RQFCEAAVKQ PSQEQQMQLL ADPSAVRYAQ ALLDREMAAL GLQQAMWAEE 1080 ARESAVQGSA AAERLAAAQA ELADADAELN HVQLEGPANH RKRDPIDKAT KEAEYREKVA 1140 DLKARIDSCT ARVNSEEEQV NTAKVIREEN AKRQHDNAAA QLRTCTDHRC TMDALLNPDG 1200 VPSDFLAAAD NSEAASLAQQ PWYRILYVAQ AINLYAERPY LQPGLPEARD FAQATEHSKQ 1260 LTNAFRSDIQ KFWDELENAR RKLQELACVD LAGEITERAL ELVRAHIEAA AAHDREEAAA 1320 RLLLELELED AGKKAAEEKK GKKIKAKKKA GKAPKGERES EAALQTDAAP AAARIKQQGS 1380 QKDLDIEYEA ALERRRKEVE GEKLQRHKEQ ERLRTAAASQ QQAETSEVTN GASAAQEEES 1440 SDGEASAPAD APAAEPGPNG LMNEAEFDAA TRAAIQASLR DVKTPRESAG GPDAQPEASP 1500 DWQGPAAEAK KKRNRKQRYK ENLEKEKEAA APKMRIVSYF GDWTCECGRQ NRLWDTCKCQ 1560 KAGPCRDWVR GRCKYGDECR FSHPPFDLPS GTAPSSPIAR PSSDAEQLNP LAQPLPPVPP 1620 PPSAITAPGP RDGRAKAVAM TASASENSLT GMQQSVPPAS PAAPQLTSTW EQQQPQQQQQ 1680 EPAASIQPPP PPPPKPASPQ VSPDAAQAKN HPVPEQPPLQ EQQEQQAQQP APAVHEHPAF 1740 AGWAKAKAQQ PQQEPVKEQP PPPAETRVEE PTFKRWARGA PGPLARAASA SAAATSAIIS 1800 NTDPVVSWNP SGVALAPEER SPPAAAQAPV AEGPPTQDQI VAPPKRTASL SRIFPAAGGP 1860 ADTAAMPGWA QMGGWGRGNG GLGGVAVAAT SIAPPAASAA PAAVDAFDPF GDNPLHRALA 1920 ADYRRDPVVA QPARKAPGAG PLLRPSNPAA QAAPPLRPAL PPPAANVHRA ESASDILGSM 1980 FYGQQRLGAP EVSLAPLLQQ QRQQSQLAQW SMLQGQMRGS PLPSSNSNNG ANSVASLPAW 2040 LPSASPQQQQ PRPPGPPLGI NGGWEGSAAL QNGYHGKVPS LSRTSSSPVI LGQRFEEQLG 2100 QRRLPVPKAA PVYGLERVQA VNSDLLSFLS GTCIALWHLP QFRTSLITVQ DSQLPASPNL 2160 RVLSGLRAAF VALTASAGTP SSRSPSPFGA PTLNGLSNPT SVLAQQGTNA APLEVREALA 2220 RAVEDAVGGA ALQPTDLLQV LLACLDRALP TPPGQASIFQ QLLGLQAHQA RHAFVMQCGG 2280 CGRGQESAAV RMVQVLPAAV VRAAGNLQHS QQPSLESMLA VHLSETLSIG VCPPGKARRA 2340 VNERLSIQTD GLPIPAYRVQ KSPEMLMQQG GCGWKGKAMT RLSGSPAVCV VALAWSGPAL 2400 QVDVVAVCSA IPLKLDLKQA FPGVGTEAMR LRCMLCGNLG GHMTFAREAA GDSWRLFAAG 2460 AAMPVGEWPA VLARCRVHSL QPLALFFDSA W*

Sequence ? help Back to Top

Protein Sequence Length: 2492 aa Download sequence Send to blast

MPIKARLLYH EAATLDPAES TQNNRQRLDL LQEALDSGQT ASDLCPASLS CAALRATMVT  60
NALRIQDQVQ AWVKEGRWQE LANEKREVLL HMQDVLRSCH TLLQTTQIPM NGVVNLLQHI  120
LKPHHEELKA WANQLLLSKT ALLEALQQQV EKQQAMADLI KRIKPQDGCA ARSAGPMASV  180
PQPSLGPRQD GPASQASLSM DRDFDYGKDP TALNRRKARK ANERRNELTM QERFQDVKDF  240
WLKQGPTRRR QLLKVPIRRL LQVIQREHGQ QIAEELEHGL SLLREYSNMR ACFWICPFCP  300
GKEGAPRQFT SAKDFLTHVD ACHEGVQLSE DGLPCICNSC NCQVVGDHYR STAETGGVLC  360
LRCHHLELVG GGQAKLQSYE RIASQDPASL HCGWEDDSDF FSSRGSFGSL DEEYVRDSLA  420
ALGSRLPPGA LPPFGTAEAS QWFDDWNQSM EAQMRSRLPF GPDGQQVLQP EQMPPGSMAL  480
GHPVFAPVQL DAGSSGAQQA AEQVPHLNGG VSLPPRGTRR SRGESGAEGD GGSSAAATDG  540
SGASHPWGVN GPSMNSGEGQ TDGSSPWRSL FPKQLELWRN AYSERAAGAQ NGGSSTPMLS  600
YADRVRKAGF PKPEAAPLPP ALTNGTAPHA AASSMIAMQP MPWLPASGAP LGMIHAPYPD  660
PASLGAMLPM EAAQIGPPGS YEGQLVSHIM QYINNLWRVD PSNFAATLNM ICMRAPALMQ  720
RMMDHELAAN AAVDERFAAQ QQGAAGTAAA APSQPALPPS SKPLQHPHEL EAALSQLPMG  780
DLNTLLRYIC QYMPMGPCPG VVPPTGPPLS DGTSSDGGDW DEEQVCPPLF GFASPSDADQ  840
LDNIADDVLG AQGAEEDTRL IRAQEEPELE DNTAEAGEPS LVVQPWWMNH LLEARGADTN  900
GTPGGTTTGG IAEADVGLRL LRWAYGAVVN TTAAAVMERR RELLSGKTAD AALLGLYEDI  960
ARVWRRLNEL GSKKSRLQQL RRGSERAIRE VRELEERGSA SLRAQAAQYV EALLPPSEAA  1020
QGQPCAPSAV RQFCEAAVKQ PSQEQQMQLL ADPSAVRYAQ ALLDREMAAL GLQQAMWAEE  1080
ARESAVQGSA AAERLAAAQA ELADADAELN HVQLEGPANH RKRDPIDKAT KEAEYREKVA  1140
DLKARIDSCT ARVNSEEEQV NTAKVIREEN AKRQHDNAAA QLRTCTDHRC TMDALLNPDG  1200
VPSDFLAAAD NSEAASLAQQ PWYRILYVAQ AINLYAERPY LQPGLPEARD FAQATEHSKQ  1260
LTNAFRSDIQ KFWDELENAR RKLQELACVD LAGEITERAL ELVRAHIEAA AAHDREEAAA  1320
RLLLELELED AGKKAAEEKK GKKIKAKKKA GKAPKGERES EAALQTDAAP AAARIKQQGS  1380
QKDLDIEYEA ALERRRKEVE GEKLQRHKEQ ERLRTAAASQ QQAETSEVTN GASAAQEEES  1440
SDGEASAPAD APAAEPGPNG LMNEAEFDAA TRAAIQASLR DVKTPRESAG GPDAQPEASP  1500
DWQGPAAEAK KKRNRKQRYK ENLEKEKEAA APKMRIVSYF GDWTCECGRQ NRLWDTCKCQ  1560
KAGPCRDWVR GRCKYGDECR FSHPPFDLPS GTAPSSPIAR PSSDAEQLNP LAQPLPPVPP  1620
PPSAITAPGP RDGRAKAVAM TASASENSLT GMQQSVPPAS PAAPQLTSTW EQQQPQQQQQ  1680
EPAASIQPPP PPPPKPASPQ VSPDAAQAKN HPVPEQPPLQ EQQEQQAQQP APAVHEHPAF  1740
AGWAKAKAQQ PQQEPVKEQP PPPAETRVEE PTFKRWARGA PGPLARAASA SAAATSAIIS  1800
NTDPVVSWNP SGVALAPEER SPPAAAQAPV AEGPPTQDQI VAPPKRTASL SRIFPAAGGP  1860
ADTAAMPGWA QMGGWGRGNG GLGGVAVAAT SIAPPAASAA PAAVDAFDPF GDNPLHRALA  1920
ADYRRDPVVA QPARKAPGAG PLLRPSNPAA QAAPPLRPAL PPPAANVHRA ESASDILGSM  1980
FYGQQRLGAP EVSLAPLLQQ QRQQSQLAQW SMLQGQMRGS PLPSSNSNNG ANSVASLPAW  2040
LPSASPQQQQ PRPPGPPLGI NGGWEGSAAL QNGYHGKVPS LSRTSSSPVI LGQRFEEQLG  2100
QRRLPVPKAA PVYGLERVQA VNSDLLSFLS GTCIALWHLP QFRTSLITVQ DSQLPASPNL  2160
RVLSGLRAAF VALTASAGTP SSRSPSPFGA PTLNGLSNPT SVLAQQGTNA APLEVREALA  2220
RAVEDAVGGA ALQPTDLLQV LLACLDRALP TPPGQASIFQ QLLGLQAHQA RHAFVMQCGG  2280
CGRGQESAAV RMVQVLPAAV VRAAGNLQHS QQPSLESMLA VHLSETLSIG VCPPGKARRA  2340
VNERLSIQTD GLPIPAYRVQ KSPEMLMQQG GCGWKGKAMT RLSGSPAVCV VALAWSGPAL  2400
QVDVVAVCSA IPLKLDLKQA FPGVGTEAMR LRCMLCGNLG GHMTFAREAA GDSWRLFAAG  2460
AAMPVGEWPA VLARCRVHSL QPLALFFDSA W*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1511	1517	KRNRKQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649960.1	0.0	hypothetical protein COCSUDRAFT_61635
TrEMBL	I0Z447	0.0	I0Z447_COCSC; Uncharacterized protein
STRING	XP_005649960.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17043418

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]