PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2462_g

Common Name

COCSUDRAFT_61672

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 474aa MW: 50717.9 Da PI: 6.8269

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2462_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.2e-09	370	419	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W+ eE e lv +v++ Ggg W+ I + +g R++ ++k++w++++ Genemark1.2462_g 370 NPWSIEETEALVVGVERCGGGKWADIKK-LGfpiiAQRSAVDLKDKWRNLM 419 69*********************966.555799************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-12	363	422	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.586	364	423	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-15	366	451	IPR009057	Homeodomain-like
SMART	SM00717	0.0031	368	421	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-7	370	418	IPR001005	SANT/Myb domain
CDD	cd11660	2.43E-21	371	420	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MQSFSVHQAP ESLEGQDEYD LFGITRSMDW LDADGQQTPR GASPKPEDAD FGLRTGPLSR 60 LYLDEISEEH HSCSETSIAP FHHLGTPSYM LSDASASGAV LPCGASPAAH LLGRNTSGEL 120 QFLMETEGDL CNPSAMLEGG MPIHKPASSN SIADGGGALY PATPPQNILS KRDWLDPYHR 180 SSPQDSGTSV FSSRSSMDTV HLLADVPDVP LDGPLGSRNI HLPYGFERYS SLDSCAGLGD 240 LAAEEVLVGI EPLCASPPPT PLGMCYAPLP AHGRSSRAAG SPRACSSPAA SAPAEKAESE 300 GYTGLRQRAC KRKVKYSDTE PPLGSASDGP RSLVTSARGR CSKPRRFFCA GAESDEEVSE 360 GSNKRRKHHN PWSIEETEAL VVGVERCGGG KWADIKKLGF PIIAQRSAVD LKDKWRNLMR 420 VALLPGTAAK TKIEKRREVP QELLDRVRTL SASFGSKASA SARPYLGRPR RSV*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MQSFSVHQAP ESLEGQDEYD LFGITRSMDW LDADGQQTPR GASPKPEDAD FGLRTGPLSR  60
LYLDEISEEH HSCSETSIAP FHHLGTPSYM LSDASASGAV LPCGASPAAH LLGRNTSGEL  120
QFLMETEGDL CNPSAMLEGG MPIHKPASSN SIADGGGALY PATPPQNILS KRDWLDPYHR  180
SSPQDSGTSV FSSRSSMDTV HLLADVPDVP LDGPLGSRNI HLPYGFERYS SLDSCAGLGD  240
LAAEEVLVGI EPLCASPPPT PLGMCYAPLP AHGRSSRAAG SPRACSSPAA SAPAEKAESE  300
GYTGLRQRAC KRKVKYSDTE PPLGSASDGP RSLVTSARGR CSKPRRFFCA GAESDEEVSE  360
GSNKRRKHHN PWSIEETEAL VVGVERCGGG KWADIKKLGF PIIAQRSAVD LKDKWRNLMR  420
VALLPGTAAK TKIEKRREVP QELLDRVRTL SASFGSKASA SARPYLGRPR RSV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649999.1	0.0	hypothetical protein COCSUDRAFT_61672
TrEMBL	I0Z486	0.0	I0Z486_COCSC; Uncharacterized protein
STRING	XP_005649999.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1276	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-17	TRF-like 6

Link Out ? help Back to Top
Entrez Gene	17043457

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]