PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.422_g

Common Name

COCSUDRAFT_55478

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 945aa MW: 96925.2 Da PI: 7.9517

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.422_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E+ +++da +++G W++I +++g +t+ q++s+ qk+ Genemark1.422_g 56 REKWTDQEHARFLDALRMYGRA-WRRIEEHIG-SKTAVQIRSHAQKF 100 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.64E-15	50	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.859	51	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-7	53	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-16	54	103	IPR006447	Myb domain, plants
SMART	SM00717	4.2E-11	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-11	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.99E-7	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0042754	Biological Process	negative regulation of circadian rhythm
GO:0043433	Biological Process	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686	Biological Process	response to cadmium ion
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MSQMERSETE ERRDAETLAG LANAPSTSGG NEDRPSSSGL KRKTKTRKPY TITKQREKWT 60 DQEHARFLDA LRMYGRAWRR IEEHIGSKTA VQIRSHAQKF FSKLEKQEMS GAKGEGLPDS 120 IINIPPPRPK RKPSHPYPRK PFSGIGSYDG AGTTEGAGSQ DQMPAHARMP DYSHLAPKLK 180 GNERLDVAVA AVTQAASAAA AAAAAAVISA AGEHIRAHMQ ACPPQCFPFY GLAPSMLAQL 240 SLQQLSPQGA LQGSQSSMLP QYSAFNLAAQ TAPPAVGRPG AFSKLQRSEF SGTSADPLSA 300 PVPVRAIGRT NVDGSDGNSA CSREDPLAED GRLPGDTGAT SRQGMGVNTL SSWPSGVGLQ 360 QQAAMQQQWS PEMLSELYYN WNNMTSLSAA AAGASGGVEA AAATKDSNWR AVVQAAAAAA 420 SQWEVQKLSG LQHRDSGMGQ TQSVSAQAMG KDKTLPVQNI ASRSALRGNK VHSLELKARR 480 QGLSGSDGSG TNAAEGRVDA ACANVGNPDA GDEDSPSRNF DDSLYQPLGK KGAMGSLDTN 540 NSDLDTGMKG EGELAYQVDA EGEGSGSNPT GNGESGNNSN GNSGGEGKRG SNKGSNSGSG 600 NDTDPCDKDV IGTSKEPAAA APPQSVRESI AGNDAGGSGG TNGTGSGSGN ATRISNGATV 660 PTGLSKREGS DEGCTSLEHP QPRAHGVGSS EPADPAAAAA AAAAAAAFLA QQPAAAAAPD 720 FSALNGAQGL MDTAQMAQAA SALQQSGLAP YLLQQQYNAQ IVQLQQAAMM NWGGQKMSAL 780 DMFSSIMGFQ ALAGQQAGHL QAPALRPRPS AIPANSAGAR ELLSAQSGMA SFDAMPHAPG 840 MVPWASADVG AGLADAAALP TAASGVLPRP GKPPVGAGAG ADSVSVSGHA HQSQGFMPYK 900 WRHHPLPRGV HQLQPGGLLS LGKRSASASL AEPARKRALS GNLP*

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MSQMERSETE ERRDAETLAG LANAPSTSGG NEDRPSSSGL KRKTKTRKPY TITKQREKWT  60
DQEHARFLDA LRMYGRAWRR IEEHIGSKTA VQIRSHAQKF FSKLEKQEMS GAKGEGLPDS  120
IINIPPPRPK RKPSHPYPRK PFSGIGSYDG AGTTEGAGSQ DQMPAHARMP DYSHLAPKLK  180
GNERLDVAVA AVTQAASAAA AAAAAAVISA AGEHIRAHMQ ACPPQCFPFY GLAPSMLAQL  240
SLQQLSPQGA LQGSQSSMLP QYSAFNLAAQ TAPPAVGRPG AFSKLQRSEF SGTSADPLSA  300
PVPVRAIGRT NVDGSDGNSA CSREDPLAED GRLPGDTGAT SRQGMGVNTL SSWPSGVGLQ  360
QQAAMQQQWS PEMLSELYYN WNNMTSLSAA AAGASGGVEA AAATKDSNWR AVVQAAAAAA  420
SQWEVQKLSG LQHRDSGMGQ TQSVSAQAMG KDKTLPVQNI ASRSALRGNK VHSLELKARR  480
QGLSGSDGSG TNAAEGRVDA ACANVGNPDA GDEDSPSRNF DDSLYQPLGK KGAMGSLDTN  540
NSDLDTGMKG EGELAYQVDA EGEGSGSNPT GNGESGNNSN GNSGGEGKRG SNKGSNSGSG  600
NDTDPCDKDV IGTSKEPAAA APPQSVRESI AGNDAGGSGG TNGTGSGSGN ATRISNGATV  660
PTGLSKREGS DEGCTSLEHP QPRAHGVGSS EPADPAAAAA AAAAAAAFLA QQPAAAAAPD  720
FSALNGAQGL MDTAQMAQAA SALQQSGLAP YLLQQQYNAQ IVQLQQAAMM NWGGQKMSAL  780
DMFSSIMGFQ ALAGQQAGHL QAPALRPRPS AIPANSAGAR ELLSAQSGMA SFDAMPHAPG  840
MVPWASADVG AGLADAAALP TAASGVLPRP GKPPVGAGAG ADSVSVSGHA HQSQGFMPYK  900
WRHHPLPRGV HQLQPGGLLS LGKRSASASL AEPARKRALS GNLP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00119	DAP	Transfer from AT1G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005652015.1	0.0	hypothetical protein COCSUDRAFT_55478
TrEMBL	I0ZA02	0.0	I0ZA02_COCSC; Uncharacterized protein
STRING	XP_005652015.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP454	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	3e-31	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	17045486

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]