PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5860_g
Common NameCOCSUDRAFT_56831
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 640aa    MW: 67786.9 Da    PI: 10.4809
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5860_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11401450155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s ++GV++++ ++rW+A+++       + k+ +lg +  +e+Aa+a++ a+++ +g
  Genemark1.5860_g 401 SVFRGVSRHRLTQRWEASLWL------SgKQMYLGGYVNEEDAARAYDLAALACKG 450
                       689***************999......44**********************98766 PP
2AP222.43.1e-07493536149
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                       s+++GV+   + g W+A+I  + +   rk++s g + t+eeAa+++++a
  Genemark1.5860_g 493 SRFRGVS--GQAGHWEARIGTFGD---RKNVSFGIHETEEEAARQYDRA 536
                       6899997..4589*****999844...5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-13401458IPR016177DNA-binding domain
PfamPF008471.5E-6401450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-13402458IPR001471AP2/ERF domain
PROSITE profilePS5103215.013402458IPR001471AP2/ERF domain
SMARTSM003807.5E-16402464IPR001471AP2/ERF domain
PROSITE profilePS5103210.995468550IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-9494550IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-8494551IPR016177DNA-binding domain
SMARTSM003802.9E-7494556IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MPSGGTENKK NDSQQKTRRR SRGGSAEAKT NDLSAEDWNF LLRWQGQQDD GNWTLALAER  60
LLPVSEARQS TGHAEPRSSA PAGEPSPASA GSLEQKEASL GEYREQVQRW EQAQRQGAAP  120
AAQLRSLPFP FHLAQGAPSP ANAGLGELLS MAQQASAQQN HAAAPSCWPG SLPPSPTKAA  180
GRPKRETSSP CSTTAPPNLV PPWLGQTISF TTWFQGSRQE QEGDLHAPAQ QFPSPGASPD  240
PARTLFADAR GGSGRPERRP GRPRRQPLER AHTAPSDAAA AWPDASRGAS DPGAHRGKPR  300
AARQGLRGGR GEAAAEASQG GTELEAMAGV TLTRAGRVRL PSKRSLDAAD EDFLDNDDSP  360
TGADRKSAAA PPSKAAKGSA RISAGAGGGA QKRQPGAAAS SVFRGVSRHR LTQRWEASLW  420
LSGKQMYLGG YVNEEDAARA YDLAALACKG PSVPTNFAAA DYEGNLSEIR GSSREEIVAW  480
VRRRSSAFSR GRSRFRGVSG QAGHWEARIG TFGDRKNVSF GIHETEEEAA RQYDRALIIE  540
KGRAAKANFP LGVYDVEVAS FENFVAKRFG GCTSAAARAF LAEMALPFDE TAPNGSKASL  600
PPVREKNRGG RPRNNAASII YASALQQSLA VRGSAAAQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646169.10.0hypothetical protein COCSUDRAFT_56831
TrEMBLI0YTA60.0I0YTA6_COCSC; Uncharacterized protein
STRINGXP_005646169.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-23AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]