PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.6190_g
Common NameCOCSUDRAFT_57161
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 449aa    MW: 48015.2 Da    PI: 10.2438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.6190_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.64.9e-07260304148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+e+ e+l+++++  G + W    + +g  R ++ +++++++++
  Genemark1.6190_g 260 KGKWTAEDVEKLKELHAAKGDR-WVEMGASLG--RLPEAVRDKFRTLK 304
                       79******************99.***888887..9999******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-5174246IPR009057Homeodomain-like
PROSITE profilePS500904.437176241IPR017877Myb-like domain
SMARTSM007170.53180256IPR001005SANT/Myb domain
SuperFamilySSF466899.79E-7254308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-7258303IPR009057Homeodomain-like
SMARTSM007173.2E-7259306IPR001005SANT/Myb domain
PROSITE profilePS500906.446260304IPR017877Myb-like domain
CDDcd001672.09E-4262304No hitNo description
PfamPF139211.3E-8263322No hitNo description
PROSITE profilePS500904.344306353IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4308329IPR009057Homeodomain-like
SMARTSM007174.1310425IPR001005SANT/Myb domain
PROSITE profilePS500905.552354401IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4372402IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MATHVGSGNR GGHAGPSSSQ PAEQPKQKKP KHGNGTATEQ PLLAAAQQAL ANEEKSQKKR  60
KRMEAKLQQA AEPSSGQEEP AAAAADQLPK KKKKDKTAAS EPTALGKGAP AIPTSAGKEG  120
AAVRKQAGAP GGAAGDAVVA PKKKGANAAV KGSAGGVKTV SLEGPELKSW REDYKRTNVK  180
HGKFSSAERD AIRQAVKEYA EAHQLSQTDL DWLYCTRKSS AEARRRTEGA WTSIAAALPH  240
RKAKAVWSCG TRMLHLGNYK GKWTAEDVEK LKELHAAKGD RWVEMGASLG RLPEAVRDKF  300
RTLKLGDARK AGAWTPEEEG KLTELVSTYL AKRPAEERVS GRIVLDDVPW DAISDWGVGD  360
DRRLLKSLFR SGAVNDWELD WGALVPGRAA AVTRRRWRLM LKCVPDGADK GFDECVDFLV  420
EKYTPDLKTK GEKGNAAADG AASPAEAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005645803.10.0hypothetical protein COCSUDRAFT_57161
TrEMBLI0YS900.0I0YS90_COCSC; Uncharacterized protein
STRINGXP_005645803.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-25MYB_related family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]