PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.7281_g

Common Name

COCSUDRAFT_58252

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

Nin-like

Protein Properties

Length: 92aa MW: 10607.7 Da PI: 10.8738

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.7281_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	43	8.9e-14	1	26	27	52
RWP-RK 27 vclTvLKriCRqyGIkRWPhRkiksl 52 ++lT+LK++CR++G+kRWP+Rk+ks+ Genemark1.7281_g 1 MGLTLLKKRCRELGLKRWPYRKLKSM 26 689*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.514	1	46	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-10	2	25	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGLTLLKKRC RELGLKRWPY RKLKSMDKLL QSIESVDGQD PQVAKAVDEV KTHKKLMLLA 60 PSETQIEVGI KKFRQAAYKF EFKSKRMLAR T*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644571.1	2e-60	hypothetical protein COCSUDRAFT_58252
TrEMBL	I0YNQ8	3e-59	I0YNQ8_COCSC; Uncharacterized protein
STRING	XP_005644571.1	6e-60	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-17	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17038001

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]