PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.7971_g

Common Name

COCSUDRAFT_59655

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 467aa MW: 52871.5 Da PI: 6.4607

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.7971_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.3	1.2e-06	103	155	4	55
XCHHHCH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrk.qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr++r+ +kNR+A++r+R+R k+++ e+ v++L+++ ++L e +l+ Genemark1.7971_g 103 VKRQKRLaEKNRTAQKRYRERQKEKMHDFEKQVEQLSEQVSMLMREKASLETR 155 688888636*******************************9999887777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-5	100	165	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	103	160	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-7	104	163	No hit	No description
CDD	cd14688	1.15E-7	104	165	No hit	No description
SuperFamily	SSF57959	1.62E-6	106	161	No hit	No description
PROSITE pattern	PS00036	0	108	123	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MTSSGYGTGV QTSFGHELLS SSLSLPSDGR FQQELLAASR SAPPLRAIPQ ASNGMAGFRL 60 QQLHQPPEAL LQPENISMLT PQRSRGSSED DYAPPHNEPV GQVKRQKRLA EKNRTAQKRY 120 RERQKEKMHD FEKQVEQLSE QVSMLMREKA SLETRNSLLE RVVQLKDEQQ QHTDGREGTM 180 SPEQLALCRA LSDFHNIVRV RDPPIAPEDI SFSDHTYVLQ LYNAYANELM QCMLSAYADD 240 PSSEGFQRME QLVRGHQNAV LQLTRQDPKH ITKLTQELKK RTPPKSQELW RKCVDVMKLD 300 KEQKRRLVGL RNELFERMES IIEQRRRIIT HLEALQASDE LKESLELEHK EVSQFVSAFH 360 ASDILTPLQA ARSTIEAYPY MQDVFGIIET IAAEEGEQSQ GSFMASLMGQ RNNGSLMPVD 420 SAFRMVSSVP PPLRTASNSH ETQDSQEQDL SATILDNPRK FSSASS*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MTSSGYGTGV QTSFGHELLS SSLSLPSDGR FQQELLAASR SAPPLRAIPQ ASNGMAGFRL  60
QQLHQPPEAL LQPENISMLT PQRSRGSSED DYAPPHNEPV GQVKRQKRLA EKNRTAQKRY  120
RERQKEKMHD FEKQVEQLSE QVSMLMREKA SLETRNSLLE RVVQLKDEQQ QHTDGREGTM  180
SPEQLALCRA LSDFHNIVRV RDPPIAPEDI SFSDHTYVLQ LYNAYANELM QCMLSAYADD  240
PSSEGFQRME QLVRGHQNAV LQLTRQDPKH ITKLTQELKK RTPPKSQELW RKCVDVMKLD  300
KEQKRRLVGL RNELFERMES IIEQRRRIIT HLEALQASDE LKESLELEHK EVSQFVSAFH  360
ASDILTPLQA ARSTIEAYPY MQDVFGIIET IAAEEGEQSQ GSFMASLMGQ RNNGSLMPVD  420
SAFRMVSSVP PPLRTASNSH ETQDSQEQDL SATILDNPRK FSSASS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	305	DKEQKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643717.1	0.0	hypothetical protein COCSUDRAFT_59655
TrEMBL	I0YLA4	0.0	I0YLA4_COCSC; Uncharacterized protein
STRING	XP_005643717.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1904	6	6

Link Out ? help Back to Top
Entrez Gene	17037103

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]