PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.8628_g

Common Name

COCSUDRAFT_60312

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 205aa MW: 22074 Da PI: 8.5087

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.8628_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.2	2e-09	4	60	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++r r++ NRe+Arr R+R++ ++ ++k+ke+e+ N L ++l + + + +++ Genemark1.8628_g 4 RRRILRRIANRESARRVRARRLDLLDDMAQKAKEMEEANGWLLQRLASVESKHSAMV 60 6899***************************************99998887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-5	1	65	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	3	66	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	3	60	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.3E-8	5	57	No hit	No description
SuperFamily	SSF57959	6.47E-8	5	60	No hit	No description
CDD	cd14702	8.55E-11	6	57	No hit	No description
PROSITE pattern	PS00036	0	9	23	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MFERRRILRR IANRESARRV RARRLDLLDD MAQKAKEMEE ANGWLLQRLA SVESKHSAMV 60 NEVQSLDADL RVKSAENEVL HGKVQQMRKS FTEADGQAIK AVLRSAPAQL TRGDASFPAA 120 AVRNGAELAP AQGVFSGVYS PGLMAAEESC ALLSSSSPAS GGLPGGTPFG FATAAPDLTM 180 PQIEPIDRSF SEFLKDEFAR NGGI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005642888.1	1e-146	hypothetical protein COCSUDRAFT_60312
TrEMBL	I0YIX5	1e-145	I0YIX5_COCSC; Uncharacterized protein
STRING	XP_005642888.1	1e-146	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17036369

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]