PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.90_g

Common Name

COCSUDRAFT_55146

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 235aa MW: 24665.4 Da PI: 4.7253

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.90_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.6	1.1e-07	114	168	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e ++ rrk+ NR +Arr R+RK e+e L++ v++L+++ ++L + +l e Genemark1.90_g 114 EERKKRRKEINRQSARRIRERKNNEMESLRQQVANLQQQQQMLLRYAAQLAREKN 168 567899*************************************999888877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.3E-8	112	172	No hit	No description
SMART	SM00338	0.0013	112	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	114	177	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-6	116	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDVARPGPPD AMLNEAVPSD GAGADMEALS LSHELLTQLA QLGAFPGNVN LDQFNGDPSA 60 TAAVLQAAGL GSADIPQQPF EPAGPSEQPG TSGDGGEGQD ERTVIKRKTP LNEEERKKRR 120 KEINRQSARR IRERKNNEME SLRQQVANLQ QQQQMLLRYA AQLAREKNAL VQRTLELTER 180 LNAVAAAGNP DARLPAFDGS SGFTAAAVAP VPAALGNSAD AAASDTAAVL GQPV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	120	KRKTPLNEEERKKRRK
2	115	121	RKKRRKE
3	116	120	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005651666.1	1e-165	hypothetical protein COCSUDRAFT_55146
TrEMBL	I0Z903	1e-164	I0Z903_COCSC; Uncharacterized protein
STRING	XP_005651666.1	1e-165	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17045137

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]