PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.968_g
Common NameCOCSUDRAFT_59006
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 366aa    MW: 39633 Da    PI: 5.4101
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.968_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-1264126255
              AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng......kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GV++++++gr++A+++d s+   +       r k+++lg + t+ eAa+a+++a+ k++g
  Genemark1.968_g  64 AFRGVTRHSTTGRYEAHLWDSSWsrPKtvkggrTRgKQVYLGGWLTEHEAAEAYDKAAIKYWG 126
                      58******************7775622555565227**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-1263135IPR016177DNA-binding domain
CDDcd000183.68E-1563135No hitNo description
SMARTSM003809.4E-2064140IPR001471AP2/ERF domain
PROSITE profilePS5103216.4564134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1264134IPR001471AP2/ERF domain
PfamPF008478.5E-765126IPR001471AP2/ERF domain
PROSITE profilePS510329.717123191IPR001471AP2/ERF domain
SMARTSM003805.2E-4150197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-7164191IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6164192IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEYTGTDVIA QAHDEPTWIF KGTGEVLAPD SAPQAVPDVS SHAPSNIGPA AIKKRSGRCA  60
SSSAFRGVTR HSTTGRYEAH LWDSSWSRPK TVKGGRTRGK QVYLGGWLTE HEAAEAYDKA  120
AIKYWGREAS LNFTWERYEG MMADLDAMTR EEVVAMLKRN STGFSSEEEA AQAYDRAAIQ  180
YRGKKAVTNF GHRSYSPEGP HLAPTSHSTS QQKPSQSRSV VKTTQLAPST PAQPDACWAG  240
GPAQELWSQG YANATDAMLQ QIILDLWPHD LPQSGKMAAV QPLSAGSEAS AESAVPEAGV  300
WEATSGLLYS GPETPPLERL PSGWNLRSME LTPFEPQALD IFSIVTDEQA LAMEHILNAA  360
SQDLQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651014.10.0AP2-domain-containing protein
TrEMBLI0Z7510.0I0Z751_COCSC; AP2-domain-containing protein
STRINGXP_005651014.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.18e-37AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]