PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0038
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 206aa    MW: 22912.8 Da    PI: 5.1118
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0038genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-061141636
     zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg 36
                 C+ ++++e++ fC  ++  lC  C  + H+ 
  Gh_A01G0038 11 CEVCDKEEATVFCPADEAALCGVCDHNVHHA 41
                 ***************************9743 PP
2zf-B_box31.92.8e-105897239
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                 e + C+ ++ek++ lfC++++  lC++C   +Hk   Ht+
  Gh_A01G0038 58 ESPLCDICQEKRALLFCQEDRAILCRECDIPIHKAneHTT 97
                 6789*****************************8889987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.836653IPR000315B-box-type zinc finger
SMARTSM003362.4E-10653IPR000315B-box-type zinc finger
CDDcd000213.44E-51153No hitNo description
PROSITE profilePS5011910.19657104IPR000315B-box-type zinc finger
SMARTSM003363.2E-1557104IPR000315B-box-type zinc finger
PfamPF006431.6E-85898IPR000315B-box-type zinc finger
CDDcd000214.70E-960104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEQKRKMKIW CEVCDKEEAT VFCPADEAAL CGVCDHNVHH ANKLATKHCR FALLQPDESP  60
LCDICQEKRA LLFCQEDRAI LCRECDIPIH KANEHTTKHN RFLLTGVKLS SSSSCSSASG  120
FPPALNTVSS SSNGGYGGQT ICSEAETTSQ SNNEIEKPLT TYRIEHNYTI GDDDVLVSMS  180
ISEYLMETLP GWRVDDFLEP SSYAAR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153041e-174JX615304.1 Gossypium hirsutum clone NBRI_GE59224 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725241.11e-154PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-67BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A1U8MEI21e-153A0A1U8MEI2_GOSHI; B-box zinc finger protein 20-like
STRINGGorai.002G004700.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-67DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]