PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0052
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 100aa    MW: 11487.3 Da    PI: 5.7073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0052genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.5e-1235923085
                 ..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3 30 keesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85
                  ++ + l ++d +g  W++++ +  ++++ + v+ +GW +Fv+ ++L++gD+vv++++
  Gh_A01G0052 35 CHGRIVLNVKDDEGTFWNFRCLIrtERYGPKLVIVSGWIDFVRTKDLRQGDIVVLYRE 92
                 34567899*************7755666666************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.57E-14394No hitNo description
Gene3DG3DSA:2.40.330.103.8E-14394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-12493IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-92892IPR003340B3 DNA binding domain
PROSITE profilePS508639.20641100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEIFATVLTI TDIERRLSVS NGCLLLQALS HFNGCHGRIV LNVKDDEGTF WNFRCLIRTE  60
RYGPKLVIVS GWIDFVRTKD LRQGDIVVLY REEDVIAGME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286336.11e-27auxin response factor 3-like
TrEMBLA0A2P5W7I02e-66A0A2P5W7I0_GOSBA; Uncharacterized protein
STRINGEOX981173e-28(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3542022