PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0131
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 245aa    MW: 27502 Da    PI: 4.6554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0131genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.4e-19111302128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  p GfrF Pt ee++++yLk+ ++g +++    +  +   + ePw++    ++++ e  + +++  k+++++r +r++ +g W ++   kev+++ +ge
  Gh_A01G0131  11 PIGFRFLPTKEEILCDYLKPIIKGYPIHS-G-VMMIYGANREPWNIF---DQDSAEALWVITK-LKKRSKSRIERTAGDGCWLQQYV-KEVKNEdGGE 101
                  89************************888.4.555666778*****5...3333444444444.3445679***********98877.5555554999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g  k ++f +++++k ++ +W+mhey+l
  Gh_A01G0131 102 VIGFDKYFTFTSKKSEK-SNGQWIMHEYSL 130
                  9*********9655555.89********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-214151IPR003441NAC domain
PROSITE profilePS5100524.74610151IPR003441NAC domain
PfamPF023651.3E-1411130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTVRSQLQI PIGFRFLPTK EEILCDYLKP IIKGYPIHSG VMMIYGANRE PWNIFDQDSA  60
EALWVITKLK KRSKSRIERT AGDGCWLQQY VKEVKNEDGG EVIGFDKYFT FTSKKSEKSN  120
GQWIMHEYSL KDQEAASAGL SDSVICEIKN KDAAVVSSDY EESEGEIKEN KKRKLMEVPS  180
DSTNDVAIVP EENQTFDYMA PEVGCFSPSP PFSACLNQQP NPWTLAGVDG NLGVPDYNSH  240
DLLPA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963951e-54JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752790.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8PNN40.0A0A1U8PNN4_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.002G019700.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.25e-15NAC family protein