PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0250
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 704aa    MW: 77553.6 Da    PI: 7.9311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0250genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51111351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhP+deelv++yL kkv++ ++   + + evd++k+ePwd+p+++  + kewyf+skrd+kyatg r+nrat sgyWkatgkd++++s kg 
  Gh_A01G0250  11 LPPGFRFHPKDEELVCDYLMKKVASADT--LQLMIEVDLNKCEPWDIPETAGVGGKEWYFYSKRDRKYATGLRTNRATCSGYWKATGKDRAIHS-KGM 105
                  79**********************9983..35799*************9888899***************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg++ktLvfy+grapkg+k+dWvmhe+rl
  Gh_A01G0250 106 VVGMRKTLVFYNGRAPKGTKSDWVMHEFRL 135
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-592159IPR003441NAC domain
PROSITE profilePS5100556.61411159IPR003441NAC domain
PfamPF023655.1E-2612135IPR003441NAC domain
CDDcd009830353676IPR013765DNA recombination and repair protein RecA
TIGRFAMsTIGR020126.5E-143353671IPR013765DNA recombination and repair protein RecA
HamapMF_0026844.988354679IPR013765DNA recombination and repair protein RecA
SuperFamilySSF525403.62E-54354617IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF001542.7E-117356618IPR013765DNA recombination and repair protein RecA
PROSITE profilePS5016228.668384542IPR020588DNA recombination and repair protein RecA-like, ATP-binding domain
Gene3DG3DSA:3.40.50.3001.0E-66385617IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003825.0E-9405576IPR003593AAA+ ATPase domain
PRINTSPR001421.1E-74441470IPR013765DNA recombination and repair protein RecA
PRINTSPR001421.1E-74475504IPR013765DNA recombination and repair protein RecA
PRINTSPR001421.1E-74513542IPR013765DNA recombination and repair protein RecA
PROSITE profilePS5016327.99547622IPR020587DNA recombination and repair protein RecA, monomer-monomer interface
PRINTSPR001421.1E-74558586IPR013765DNA recombination and repair protein RecA
PROSITE patternPS003210561569IPR020584DNA recombination/repair protein RecA, conserved site
PRINTSPR001421.1E-74593622IPR013765DNA recombination and repair protein RecA
Gene3DG3DSA:3.30.250.102.2E-21618675IPR023400DNA recombination and repair protein RecA, C-terminal
SuperFamilySSF547528.89E-17618674IPR023400DNA recombination and repair protein RecA, C-terminal
PRINTSPR001421.1E-74647664IPR013765DNA recombination and repair protein RecA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSNISLVEAK LPPGFRFHPK DEELVCDYLM KKVASADTLQ LMIEVDLNKC EPWDIPETAG  60
VGGKEWYFYS KRDRKYATGL RTNRATCSGY WKATGKDRAI HSKGMVVGMR KTLVFYNGRA  120
PKGTKSDWVM HEFRLDGTLS PPNLSTLKED WVLCRVFHKT RDTITKPSSM GKTCLDDTSS  180
SSLPPLTDPY LISDQTGLNS DEQVPCFSVL SQTDPNSFKV DMQPNMPTET LTSSSSVDHQ  240
QQQQMKPATN DITSCLDSFP RDKMFLKARA AAAAEEAVAA DSSSFRTVLF FSSKLKLHHH  300
SLPLQTHFQR RPLLTSSHFR LAAAKKPPRK VLCEFEPKVN GALSPDPDSR FLDRQKALEA  360
AMNDINSSFG KGSVTRLGSA GGALVETFPS GCLTLDLALG GGLPKGRIVE VYGPESSGKT  420
TLALHAIAEV QKLGGNAMLV DAEHAFDPAY SKALGVDVEN LIVCQPDNGE MALEIADRMC  480
RSGAVDLICV DSVSALTPRA EIEGEIGMQQ MGLQARLMSQ ALRKMSGNAS KAGCTLIFLN  540
QIRYKIGVYY GNPEVTSGGI ALKFFASVRL EIRPTGKIKS VKGDEDIGLR VRVRVQKSKV  600
SRPYKQAEFE IIFGEGVSKL GCILDCAEMM DVVTKKGSWY SYGDHRLGQG RDRALQYLRD  660
NPVLRDEIEK IARSMIADGT EHLSSTHVKS LSFPSQDEDI YEEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubc_A1e-1223536707323RecA
1ube_A1e-1223536707323RecA
1ubf_A1e-1223536707323RecA
1ubg_A1e-1223536707323RecA
2g88_A1e-1223536707323Protein recA
2odn_A1e-1223536707323Protein recA
2odw_A1e-1223536707323Protein recA
2oe2_A1e-1223536707323Protein recA
2oep_A1e-1223536707323Protein recA
2oes_A1e-1223536707323Protein recA
2ofo_A1e-1223536707323Protein recA
2zr7_A1e-1223536707323Protein recA
2zrm_A1e-1223536707323Protein recA
2zrn_A1e-1223536707323Protein recA
2zro_A1e-1223536707323Protein recA
2zrp_A1e-1223536707323Protein recA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in recombination ability and DNA strand transfer activity.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642857.10.0PREDICTED: DNA repair protein recA homolog 1, chloroplastic
SwissprotQ391990.0RECAC_ARATH; DNA repair protein recA homolog 1, chloroplastic
TrEMBLA0A2P5QAT10.0A0A2P5QAT1_GOSBA; Uncharacterized protein
STRINGGorai.002G033000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-85NAC domain containing protein 1
Publications ? help Back to Top
  1. Cerutti H,Osman M,Grandoni P,Jagendorf AT
    A homolog of Escherichia coli RecA protein in plastids of higher plants.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(17): p. 8068-72
    [PMID:1518831]
  2. Rowan BA,Oldenburg DJ,Bendich AJ
    RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis.
    J. Exp. Bot., 2010. 61(10): p. 2575-88
    [PMID:20406785]
  3. Jeon H,Jin YM,Choi MH,Lee H,Kim M
    Chloroplast-targeted bacterial RecA proteins confer tolerance to chloroplast DNA damage by methyl viologen or UV-C radiation in tobacco (Nicotiana tabacum) plants.
    Physiol Plant, 2013. 147(2): p. 218-33
    [PMID:22651245]
  4. Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
    Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
    Genome Res., 2015. 25(5): p. 645-54
    [PMID:25800675]
  5. Odahara M,Kishita Y,Sekine Y
    MSH1 maintains organelle genome stability and genetically interacts with RECA and RECG in the moss Physcomitrella patens.
    Plant J., 2017. 91(3): p. 455-465
    [PMID:28407383]
  6. Binet MN,Osman M,Jagendorf AT
    Genomic nucleotide sequence of a gene from Arabidopsis thaliana encoding a protein homolog of Escherichia coli RecA.
    Plant Physiol., 1993. 103(2): p. 673-4
    [PMID:8029344]