PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0439
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 177aa    MW: 20826.2 Da    PI: 8.6512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0439genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.24.9e-171467356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++ ++++eq + Le+ F  n+++  e + +LA++lg++ rqV +W+qN+Ra++k
  Gh_A01G0439 14 NKKRLNQEQGRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWK 67
                 566799***********************************************9 PP
2HD-ZIP_I/II106.52e-3414105293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl++eq +lLE+sF++++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++L+ ++++  +e++rLek+v+ L+eel++
  Gh_A01G0439  14 NKKRLNQEQGRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWKTQSLELDYNTLQVKLENALSEKRRLEKDVKYLQEELRK 105
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.256969IPR001356Homeobox domain
SuperFamilySSF466891.37E-161178IPR009057Homeodomain-like
SMARTSM003891.3E-131173IPR001356Homeobox domain
CDDcd000861.36E-111270No hitNo description
PfamPF000461.8E-141467IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-171676IPR009057Homeodomain-like
PROSITE patternPS0002704467IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDFQSQKLYS PKYNKKRLNQ EQGRLLERSF SANKKLEPEL KLQLANQLGV PPRQVAIWYQ  60
NKRARWKTQS LELDYNTLQV KLENALSEKR RLEKDVKYLQ EELRKAQETM FAMNNNQRAN  120
HHHHQQQQDQ PLNYFVSCNS TGSSEEGGSS SFHEDHEVLQ IDELYACLIG GDRSTWS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164390.0JX616439.1 Gossypium hirsutum clone NBRI_GE61116 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702003.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1U8KLY11e-129A0A1U8KLY1_GOSHI; homeobox-leucine zipper protein ATHB-52-like
STRINGGorai.002G067100.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-39homeobox protein 52