PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0526
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 327aa    MW: 36289 Da    PI: 8.9094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.83e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
      Gh_A01G0526 14 KGPWTAEEDQKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding41.82.5e-1368113247
                      SSS-HHHHH..HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEde..llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ eEde   +++++  lG++ W++Ia++++ gRt++++k++w+++
      Gh_A01G0526  68 GKFSIEEDEvkVIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 113
                      666666665227***********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129425.987965IPR017930Myb domain
SuperFamilySSF466897.11E-3011110IPR009057Homeodomain-like
SMARTSM007173.6E-161363IPR001005SANT/Myb domain
PfamPF002493.5E-171461IPR001005SANT/Myb domain
CDDcd001671.48E-131661No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2465118IPR009057Homeodomain-like
PROSITE profilePS5129419.24866118IPR017930Myb domain
SMARTSM007173.0E-1066116IPR001005SANT/Myb domain
PfamPF002495.9E-1268113IPR001005SANT/Myb domain
CDDcd001676.89E-1074114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGKPPGCDKN GLKKGPWTAE EDQKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SIEEDEVKVI IQLHSVLGNK WSAIAARLPG RTDNEIKNYW NTHIKKKLLR  120
MGIDPVTHAP RLDLLELSSL LSSSLYNSSL NPAGFVGSMF NPSFLSLATA FLSSNQTKNL  180
EINNLAGDIQ QIQNPYEPYQ GNQVPVITQV SQADLNQFSA NPGLPNLWQI DNNVSDSKGF  240
LPTTMQNING YNHGFNLGDQ NLQQVCTFSE KIPNLVPFGS LLSTPSSSST PLNNGSSTED  300
IERDSYCSSN NLLIFDVPKG LNVNGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-31121182105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-31121182105C-Myb DNA-Binding Domain
1msf_C2e-31121182105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702366.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9LDR81e-104MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1U8KIK10.0A0A1U8KIK1_GOSHI; myb-related protein 330-like
STRINGGorai.002G077200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2234145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-84MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]