PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0556
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 584aa    MW: 64962.3 Da    PI: 6.1337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0556genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.38.2e-1292115801373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+++s++++ + ++l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++++e++P+lkf++++a
  Gh_A01G0556 211 LKQLLIACAKVLSENNMDEFDKLIAKARGAVSISGEPVQRLGAYMVEGLVARKEASGSSIYRALHCREPE---GKDLLSYMQVLYEICPYLKFGYMAA 305
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++++rL+ + e++ +p+ef+  +     d++ ++L
  Gh_A01G0556 306 NGAIAEACRTEDRIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLSKyaRGGGLEAVKRRLEALSEKFSIPVEFQG-MPVFAPDITRDML 402
                  ***************************************************999989999************************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+leyy a+f+s++++lpr+ +er++vE+++l+r
  Gh_A01G0556 403 DVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFIETLEYYLAMFESIDETLPRDRKERVNVEEHCLAR 500
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn++a eg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Gh_A01G0556 501 DIVNIIASEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRGLLRCYS-KHYTLVEKDGAMLLGWKDRNLISASAW 580
                  *************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.866185562IPR005202Transcription factor GRAS
PfamPF035142.8E-126211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSHQLFGYG VTGAGLSYST FPSIPNRLFS SLKSDIGNSP NSPFFTPFDC DTNTTLSDSQ  60
EQHSSTENLS GLSPSCNSSL ESNTYFHRLS PSLDCRSESL LFSSGGTSYT QDANSGHKVI  120
YTLQELETAL MAPDENEDLT TPSVSYGESS RPQTAGQRSR AWSQECQGSL ALLPPTSFVS  180
KHRQSTEVSH VEKRQKSIED FSWRGIPPGN LKQLLIACAK VLSENNMDEF DKLIAKARGA  240
VSISGEPVQR LGAYMVEGLV ARKEASGSSI YRALHCREPE GKDLLSYMQV LYEICPYLKF  300
GYMAANGAIA EACRTEDRIH IIDFQIGQGT QWMTLLQALA ARPGGAPHVR ITGIDDPLSK  360
YARGGGLEAV KRRLEALSEK FSIPVEFQGM PVFAPDITRD MLDVRPGEAL AVNFPLQLHH  420
TPDESVDVNN PRDGLLRMVK SLSPKVTTLV EQESNTNTAP FLPRFIETLE YYLAMFESID  480
ETLPRDRKER VNVEEHCLAR DIVNIIASEG KERVERHELF GKWKSRLTMA GFRQYPLSSY  540
VNSVIRGLLR CYSKHYTLVE KDGAMLLGWK DRNLISASAW HCDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6221858025377Protein SCARECROW
5b3h_D6e-6221858025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.5900.0boll| ovule| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783290920.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702822.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8KK400.0A0A1U8KK40_GOSHI; scarecrow-like protein 21
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]