PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0650
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 25796.8 Da    PI: 8.2172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0650genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.8e-213484155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++ a++ l+g
  Gh_A01G0650 34 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDTAARTLRG 84
                 68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-133484IPR001471AP2/ERF domain
CDDcd000182.30E-323494No hitNo description
SMARTSM003802.8E-373598IPR001471AP2/ERF domain
PROSITE profilePS5103223.7883592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-323592IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233594IPR016177DNA-binding domain
PRINTSPR003674.9E-113647IPR001471AP2/ERF domain
PRINTSPR003674.9E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRGRGAAAA APAAAANAVA RRPALQPSGS IKEPRYRGVR KRPWGRFAAE IRDPWKKTRV  60
WLGTFDSAEE AARAYDTAAR TLRGPKAKTN FPINSSNIPA FPFETNHHHN EGFIDQRRLY  120
PMGDFHDPEV NPQRPTRSSM SSTVESTVES FSGPRPAQPP QKSADFAVVS TRKYYPRPPP  180
VEPEDCHSDC DSSSSVVDDG DIALSSCRKT LPFDLNFPPL DEDEDLQCTA LCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2035921472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.93880.0boll| leaf| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638633.11e-141PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9LDE45e-51ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0D2M8L51e-132A0A0D2M8L5_GOSRA; Uncharacterized protein
STRINGGorai.002G092900.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-35ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]