PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 531aa    MW: 59054.7 Da    PI: 4.6372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0795genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.75.4e-1111535231374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfsh 95 
                  lv+lLl+cAeav  +d +la+++L+++   a+p gd++qR+  +f+ +L++rl+   +v++   + ++  + ++   +e++ a++l+++++P++ f++
  Gh_A01G0795 153 LVHLLLACAEAVGCRDIHLATSMLSQIGASATPLGDSLQRVSYCFATGLKSRLSLlqNVNGNGTIANCAIDVPMIaREEKMEAFQLLYQTTPYIAFGF 250
                  68**************************************************98732333334444555554444689999***************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlele 192
                  l+aN+aI +a++g+  +HiiD+++++ lQWp+L++aLasRpegpp+lRiT++ s e  +  ele+  + L + A++lg+ +ef+++ +  + + l+ +
  Gh_A01G0795 251 LAANEAIFQAAQGKGSLHIIDLGMKHTLQWPSLIRALASRPEGPPTLRITALTSDE--DLVELEASMKSLLEDASSLGIAMEFHMISEPvTPSLLTRD 346
                  ******************************************************55..99*************************7443588999*** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L++++gE+l +n+v++lh+ ++es  + +   ++L+++k+l P ++++veq+a+hn++ Fl r+le+l+yysa+fdslea+lpr+s +r+k+Er  +
  Gh_A01G0795 347 NLNLREGESLYINSVMHLHKYVKESRGSLK---AILQAIKKLGPALLTMVEQDANHNGPFFLGRLLESLHYYSAIFDSLEASLPRHSPQRMKIERLHF 441
                  **********************88776666...9**************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ei+n+va eg++r erhe++ +Wr++l++aGF+ + l+    +qa+++l+ ++ dgy++ +e+g+l+lgWk+rpL+ +SaW+
  Gh_A01G0795 442 AEEIRNIVAYEGTDRMERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYSLGSEKGCLLLGWKGRPLMLASAWQ 523
                  ************************************9985..89***************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.867127505IPR005202Transcription factor GRAS
PfamPF035141.9E-108153523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEGFNGWLYE SFNHDFAIRR FCSARVELEQ GELGDAMNND TEVFCPDDEI STPHLAASEV  60
DDFVDSFINM DYDDDDGDGD GEGDDKNDRN SKKQQNFHHF QDKIEAFSIV NDDSLMMEGD  120
ELEMSSSCED LGANEMVPSI EEASHGVDQG LHLVHLLLAC AEAVGCRDIH LATSMLSQIG  180
ASATPLGDSL QRVSYCFATG LKSRLSLLQN VNGNGTIANC AIDVPMIARE EKMEAFQLLY  240
QTTPYIAFGF LAANEAIFQA AQGKGSLHII DLGMKHTLQW PSLIRALASR PEGPPTLRIT  300
ALTSDEDLVE LEASMKSLLE DASSLGIAME FHMISEPVTP SLLTRDNLNL REGESLYINS  360
VMHLHKYVKE SRGSLKAILQ AIKKLGPALL TMVEQDANHN GPFFLGRLLE SLHYYSAIFD  420
SLEASLPRHS PQRMKIERLH FAEEIRNIVA YEGTDRMERH ERADQWRRQL GRAGFQVMGL  480
KCLSQARMML SVYGCDGYSL GSEKGCLLLG WKGRPLMLAS AWQLHNVSSA Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6116052226378Protein SCARECROW
5b3h_A2e-6116052225377Protein SCARECROW
5b3h_D2e-6116052225377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702014.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1U8KMS20.0A0A1U8KMS2_GOSHI; DELLA protein RGL1-like
STRINGGorai.002G110100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-82RGA-like 1