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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A01G0795 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 531aa MW: 59054.7 Da PI: 4.6372 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 362.7 | 5.4e-111 | 153 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfsh 95
lv+lLl+cAeav +d +la+++L+++ a+p gd++qR+ +f+ +L++rl+ +v++ + ++ + ++ +e++ a++l+++++P++ f++
Gh_A01G0795 153 LVHLLLACAEAVGCRDIHLATSMLSQIGASATPLGDSLQRVSYCFATGLKSRLSLlqNVNGNGTIANCAIDVPMIaREEKMEAFQLLYQTTPYIAFGF 250
68**************************************************98732333334444555554444689999***************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlele 192
l+aN+aI +a++g+ +HiiD+++++ lQWp+L++aLasRpegpp+lRiT++ s e + ele+ + L + A++lg+ +ef+++ + + + l+ +
Gh_A01G0795 251 LAANEAIFQAAQGKGSLHIIDLGMKHTLQWPSLIRALASRPEGPPTLRITALTSDE--DLVELEASMKSLLEDASSLGIAMEFHMISEPvTPSLLTRD 346
******************************************************55..99*************************7443588999*** PP
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
+L++++gE+l +n+v++lh+ ++es + + ++L+++k+l P ++++veq+a+hn++ Fl r+le+l+yysa+fdslea+lpr+s +r+k+Er +
Gh_A01G0795 347 NLNLREGESLYINSVMHLHKYVKESRGSLK---AILQAIKKLGPALLTMVEQDANHNGPFFLGRLLESLHYYSAIFDSLEASLPRHSPQRMKIERLHF 441
**********************88776666...9**************************************************************** PP
GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ei+n+va eg++r erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ +e+g+l+lgWk+rpL+ +SaW+
Gh_A01G0795 442 AEEIRNIVAYEGTDRMERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYSLGSEKGCLLLGWKGRPLMLASAWQ 523
************************************9985..89***************************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 53.867 | 127 | 505 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.9E-108 | 153 | 523 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 531 aa Download sequence Send to blast |
MEGFNGWLYE SFNHDFAIRR FCSARVELEQ GELGDAMNND TEVFCPDDEI STPHLAASEV 60 DDFVDSFINM DYDDDDGDGD GEGDDKNDRN SKKQQNFHHF QDKIEAFSIV NDDSLMMEGD 120 ELEMSSSCED LGANEMVPSI EEASHGVDQG LHLVHLLLAC AEAVGCRDIH LATSMLSQIG 180 ASATPLGDSL QRVSYCFATG LKSRLSLLQN VNGNGTIANC AIDVPMIARE EKMEAFQLLY 240 QTTPYIAFGF LAANEAIFQA AQGKGSLHII DLGMKHTLQW PSLIRALASR PEGPPTLRIT 300 ALTSDEDLVE LEASMKSLLE DASSLGIAME FHMISEPVTP SLLTRDNLNL REGESLYINS 360 VMHLHKYVKE SRGSLKAILQ AIKKLGPALL TMVEQDANHN GPFFLGRLLE SLHYYSAIFD 420 SLEASLPRHS PQRMKIERLH FAEEIRNIVA YEGTDRMERH ERADQWRRQL GRAGFQVMGL 480 KCLSQARMML SVYGCDGYSL GSEKGCLLLG WKGRPLMLAS AWQLHNVSSA Y |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-61 | 160 | 522 | 26 | 378 | Protein SCARECROW |
| 5b3h_A | 2e-61 | 160 | 522 | 25 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-61 | 160 | 522 | 25 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016702014.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
| TrEMBL | A0A1U8KMS2 | 0.0 | A0A1U8KMS2_GOSHI; DELLA protein RGL1-like | ||||
| STRING | Gorai.002G110100.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17612 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 7e-82 | RGA-like 1 | ||||




