PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0812

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 1083aa MW: 119713 Da PI: 8.5518

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0812	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	4e-41	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Gh_A01G0812 151 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKALVEKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 228 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-34	146	213	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.052	149	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	150	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-30	152	225	IPR004333	Transcription factor, SBP-box
CDD	cd00204	7.24E-7	831	973	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.2E-4	831	980	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.28E-6	831	997	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1083 aa Download sequence Send to blast
MEDAGAQVAP PLYIHQALAS RFCDTPSLPR KRDLSYQASD FLYQNPSQQR VANPRDNWNP 60 KQWEWDAVRF IAKPLNTEIL QTGTATAEQR KKGHVNGNEN SITSKKATAA NDDDERLQLN 120 LGGGLNSVEE PVSRPNKKVR GGSPGSTSYP MCQVDNCKED LSNAKDYHRR HKVCEIHSKA 180 TKALVEKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQPED VTSRLLLPAN 240 RDNAGNGSLD IVSLLTLLAR TQGKKFFLND INPSPVPNRD QLLQILSKIN SLPLPMDLAA 300 KLPNVGVLNR KSQEQPSLGN QNQLNGKNTS SPSTVDLLAA LSATLTSSSS DALAMLSQRS 360 SQSSDSQKTK SICPDNVAAS SSLNRAPLEF TSFGGERSST SYQSPVEDSE CQIQETRANL 420 PLQLFSSSPE DDSPPKLASS RKYFSSDSSN PMEERSPSSS PVVQKFFPMH STPEAVKYEK 480 VPIGRHANTN AETSRAHGSI IPLELFSGSK RGTGRGSFQH FPSQAGYTSS SGSDHSPSSL 540 NSDAQQDRTG RIIFKLFDKD PSHFPGTLRT QIYNWLSNSP SEMESYIRPG CVVLSVYVSM 600 PAPAWEQLEG NLLQYVNCLL QDSDSDFWRK ARFLVHTGNR QLASHKDGKI HLCKSWLSSS 660 SPELISVSPL AVVSGQETSL LVRGRNLTNP GTEIHCAYMG GYSSMQINGS TYKGASYDEV 720 NMGSFKIQVP SPKALGRCFI EVENGFKGNS FPIIIADAAI CKELRLLESE LDTEVKASDI 780 ISEEHAYDSH RPRSREEVLH FLNELGWLFQ RSTAPLPKSS DHSLRRFKFL LMFSVESDYC 840 ALVKVLLDML VESNLDMNDL SKDSLAMLSE IQLLTRAVKR RCRKMADLLI HYSISSNDGN 900 SKKYIFPPNL EGAGGISPLH LAACTSGSDD MVDVLTNDPQ EIGLTCWSSL LDANGQSPYA 960 YAMMRNNHSY NKLVAGKYAD RRNGQVSLTI GVEDQHSGVS AVQLNKISLR FKQDRSSCAK 1020 CAVVATRSNN RFPGSQGLLQ RPYVHSMLAI AAVCVCVCLF LRGSPNIGRV SPFKWENLDF 1080 GTI

Sequence ? help Back to Top

Protein Sequence Length: 1083 aa Download sequence Send to blast

MEDAGAQVAP PLYIHQALAS RFCDTPSLPR KRDLSYQASD FLYQNPSQQR VANPRDNWNP  60
KQWEWDAVRF IAKPLNTEIL QTGTATAEQR KKGHVNGNEN SITSKKATAA NDDDERLQLN  120
LGGGLNSVEE PVSRPNKKVR GGSPGSTSYP MCQVDNCKED LSNAKDYHRR HKVCEIHSKA  180
TKALVEKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQPED VTSRLLLPAN  240
RDNAGNGSLD IVSLLTLLAR TQGKKFFLND INPSPVPNRD QLLQILSKIN SLPLPMDLAA  300
KLPNVGVLNR KSQEQPSLGN QNQLNGKNTS SPSTVDLLAA LSATLTSSSS DALAMLSQRS  360
SQSSDSQKTK SICPDNVAAS SSLNRAPLEF TSFGGERSST SYQSPVEDSE CQIQETRANL  420
PLQLFSSSPE DDSPPKLASS RKYFSSDSSN PMEERSPSSS PVVQKFFPMH STPEAVKYEK  480
VPIGRHANTN AETSRAHGSI IPLELFSGSK RGTGRGSFQH FPSQAGYTSS SGSDHSPSSL  540
NSDAQQDRTG RIIFKLFDKD PSHFPGTLRT QIYNWLSNSP SEMESYIRPG CVVLSVYVSM  600
PAPAWEQLEG NLLQYVNCLL QDSDSDFWRK ARFLVHTGNR QLASHKDGKI HLCKSWLSSS  660
SPELISVSPL AVVSGQETSL LVRGRNLTNP GTEIHCAYMG GYSSMQINGS TYKGASYDEV  720
NMGSFKIQVP SPKALGRCFI EVENGFKGNS FPIIIADAAI CKELRLLESE LDTEVKASDI  780
ISEEHAYDSH RPRSREEVLH FLNELGWLFQ RSTAPLPKSS DHSLRRFKFL LMFSVESDYC  840
ALVKVLLDML VESNLDMNDL SKDSLAMLSE IQLLTRAVKR RCRKMADLLI HYSISSNDGN  900
SKKYIFPPNL EGAGGISPLH LAACTSGSDD MVDVLTNDPQ EIGLTCWSSL LDANGQSPYA  960
YAMMRNNHSY NKLVAGKYAD RRNGQVSLTI GVEDQHSGVS AVQLNKISLR FKQDRSSCAK  1020
CAVVATRSNN RFPGSQGLLQ RPYVHSMLAI AAVCVCVCLF LRGSPNIGRV SPFKWENLDF  1080
GTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-32	142	225	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	875	880	RAVKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9083	0.0	boll\| ovule\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622322	0.0	KJ622322.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016702723.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Refseq	XP_016702724.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1U8KPS9	0.0	A0A1U8KPS9_GOSHI; squamosa promoter-binding-like protein 14
STRING	Gorai.002G112200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]