 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A01G0913 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 442aa MW: 48603.3 Da PI: 9.8014 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A01G0913 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388.5 | 1e-118 | 107 | 442 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
mdd g+re r k+ +y+ a +++ +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ erdn++++l+++ensla
Gh_A01G0913 107 MDDGGHREngRLKAdQYRTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAERDNAIANLQYRENSLA 204
99***999999999999955443345556667****************************************************************99 PP
GAGA_bind 93 ....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesa 183
s++p+g ++++g+k++++ qq +++ p++++ +++ re++ +++lp++ ++ea ++++ k+ ++ak+ ++k+ k+ kk ++++++++k
Gh_A01G0913 205 sgniSSCPPGFHISRGVKHMQHPQQnVHHlPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNKKAtKPPKKVKQENEDSDKLM- 301
99999********************76779********************99888888777777766666654433332244444444444333333. PP
GAGA_bind 184 der.........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
+ +k+++k dl+ln+v +D+st+ +PvCsCtG+lrqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+
Gh_A01G0913 302 --SgkshewkggqdvggagddlnkqlvtTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIG 397
..13346799**************************************************************************************** PP
GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
grKmS++af+klL +LaaeGydlsnpvDLk+hWAkHGtn+++ti+
Gh_A01G0913 398 GRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 442
********************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MEGSSGKGYA WAISAGFNAA FAAVSAKLLL PPVIRYGLVV FFNVIMWGCY VNSLKALSSL 60
QATVTNFATN FLTSGLAGFF LFEELLSFKR SSETVFVDLN NFLESSMDDG GHRENGRLKA 120
DQYRTAQGQW LMHQPSMKQI MAIMAERDAA IQERNLALSE KKAAIAERDM AFLQRDAAIA 180
ERNNAIAERD NAIANLQYRE NSLASGNISS CPPGFHISRG VKHMQHPQQN VHHLPHISEV 240
PYNSREMHAS DVLPVTPGTS EAAKSRQGKR AKEAKVIASN KKATKPPKKV KQENEDSDKL 300
MSGKSHEWKG GQDVGGAGDD LNKQLVTTKS DWKGKDLGLN QVVFDDSTMA PPVCSCTGVL 360
RQCYKWGNGG WQSSCCTTSL SMYPLPAVPN KRHARIGGRK MSGSAFNKLL TRLAAEGYDL 420
SNPVDLKHHW AKHGTNRYIT IK
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 280 | 288 | KKATKPPKK |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
