PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0997
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 122aa    MW: 13816.4 Da    PI: 8.9111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0997genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-152441055
          AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gh_A01G0997  2 RKWGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 44
                 46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.19152IPR001471AP2/ERF domain
SMARTSM003806.7E-28158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-26153IPR001471AP2/ERF domain
CDDcd000181.83E-23154No hitNo description
SuperFamilySSF541715.04E-18253IPR016177DNA-binding domain
PfamPF008475.9E-9244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPIA AARAYDTAVF YLRGPSARLN FPDLILQEDD  60
ELRDISPASI RKKATEVGAK VDALHTTSLH HHHASNSSES SNPPRVFSKP DLNKYPETSD  120
ED
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641012.17e-84PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-47RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2P5XBP31e-84A0A2P5XBP3_GOSBA; Uncharacterized protein
STRINGEOY144003e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-45related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]