PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1026
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28484.1 Da    PI: 8.1123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1026genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-19106160256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q  +Le+ F+++ ++  ++++ LA+kl+L  rqV vWFqNrRa+ k
  Gh_A01G1026 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTK 160
                  78889************************************************98 PP
2HD-ZIP_I/II119.12.4e-38106194189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+k+q+++LE+sF+e+++L p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL++e +eL++
  Gh_A01G1026 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQEELQELKS 194
                  69*************************************************************************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-18101163IPR009057Homeodomain-like
PROSITE profilePS5007116.131102162IPR001356Homeobox domain
SMARTSM003898.5E-16104166IPR001356Homeobox domain
PfamPF000467.1E-17106160IPR001356Homeobox domain
CDDcd000861.75E-16106163No hitNo description
Gene3DG3DSA:1.10.10.604.8E-18106160IPR009057Homeodomain-like
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PfamPF021832.4E-9162194IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-19162205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGFDDICSSG LGLGLGWNVK RENFSQSDHQ QKKRKSLVRD EHFFPSLTLG PSSDDDARKA  60
HGDDQQASSV TALSSFSNSS VKKEGDVEFD RVSSRVGDED YEGCHRKKLR LTKHQSAILE  120
DSFKEHTTLC PKQKQALAAK LDLRPRQVEV WFQNRRARTK LKQTEVDCEL LKKCCETLTE  180
ENKRLQEELQ ELKSWKLTAS YCMQLPAAAT LTMCPSCERV ANGGHGPPAT TTSIPFTIGP  240
KSHFINSLSH PSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702359.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-71HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U8KNS20.0A0A1U8KNS2_GOSHI; homeobox-leucine zipper protein HAT22-like
STRINGGorai.002G137300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-73HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]