PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1130
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35686.2 Da    PI: 7.9386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1130genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.6e-17162217257
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  rk+ ++ keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k+
  Gh_A01G1130 162 RKKLRLCKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKQ 217
                  56667789*********************************************996 PP
2HD-ZIP_I/II120.77.5e-39162249188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+k+ +eLr
  Gh_A01G1130 162 RKKLRLCKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKQKQTEVDCEYLKRSCETLREENKRLRKKLQELR 249
                  69*************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.4E-869129IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.605.8E-17143219IPR009057Homeodomain-like
SuperFamilySSF466896.13E-18155220IPR009057Homeodomain-like
PROSITE profilePS5007117.054158218IPR001356Homeobox domain
SMARTSM003891.2E-13160222IPR001356Homeobox domain
CDDcd000862.38E-14162219No hitNo description
PfamPF000461.8E-14162217IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
CDDcd146860.00132211249No hitNo description
SMARTSM003403.8E-18218261IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-8218250IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MELALSLGDP SKPFSLLGNT PKLSRSKDLG FCMGLGDGFK SQHKIDAFEA QSRGGSDVKR  60
VPSDPPLHLH LLPSSQTQLR IPCLTHEYGD GRGLDVNQLP PAAAAEEDDD EESEEGAAIS  120
SPNSTVSSFR MNFGIRNGKN KGKRDLEVER VSDDDDENGS TRKKLRLCKE QSAFLEESFK  180
EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKQKQT EVDCEYLKRS CETLREENKR  240
LRKKLQELRV LKTCQPFYMQ SPVTTLTMCP SCERLATKGS AVTGYPPFFS SINTCDPETS  300
PSPPDNFFKS LDVTSEKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166TRKKLRL
2210218RRARTKQKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5909755e-54JX590975.1 Gossypium hirsutum clone NBRI_GE25995 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738420.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466651e-85HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8NHM00.0A0A1U8NHM0_GOSHI; homeobox-leucine zipper protein HOX11-like isoform X1
STRINGGorai.002G155800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-70homeobox from Arabidopsis thaliana