PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1139

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 117aa MW: 13790.7 Da PI: 4.7149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1139	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.3	1.5e-32	4	117	1	108
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrF Pt+eelv++yL + +egk+ l++++vi+ vdiy+++PwdLp ++ + ++w+fF++r++++a+g+r++r t++g+Wkatg+ v Gh_A01G1139 4 MPPGFRFYPTEEELVSFYLYNMLEGKQedlnaLSINRVIPVVDIYEFNPWDLPpYLCHRDPEQWFFFIPRKESEARGERPKRLTDTGFWKATGSPGFV 101 79***********************88777777779**********9666677788******************************** PP NAM 93 lskkgelvglkktLvf 108 ++ +g+ +g+ +t+vf Gh_A01G1139 102 YALNGRSIGVNRTMVF 117 *************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-33	3	117	IPR003441	NAC domain
PROSITE profile	PS51005	34.63	4	117	IPR003441	NAC domain
Pfam	PF02365	2.2E-15	5	117	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MEDMPPGFRF YPTEEELVSF YLYNMLEGKQ EDLNALSINR VIPVVDIYEF NPWDLPPYLC 60 HRDPEQWFFF IPRKESEARG ERPKRLTDTG FWKATGSPGF VYALNGRSIG VNRTMVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-22	3	117	14	120	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022766085.1	3e-64	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-40	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5WED9	1e-81	A0A2P5WED9_GOSBA; Uncharacterized protein
STRING	EOY08332	7e-63	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-43	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]