PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1188
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 306aa    MW: 35285.3 Da    PI: 8.6164
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1188genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.44.4e-1946131282
     trihelix   2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                  Wt qe+ +Li+a+r ++er  +      +k  + +W+++ ++++++g+ rs++qC++kw+nl ++ykk+++ ++++ s+s+s++p++
  Gh_A01G1188  46 WTIQETVTLITAKRLDDERRAKpstsspSKPGELRWKWIENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRQYQSSH-SQSQSSHPFL 131
                  **************77777775333333468899*****************************************9.5666678875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-438110IPR009057Homeodomain-like
PROSITE profilePS500907.30638108IPR017877Myb-like domain
PfamPF138371.2E-1345137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSNPLPPPPP STHHHQHQPL NIITPATTSA TTMTSDANRE YRKGNWTIQE TVTLITAKRL  60
DDERRAKPST SSPSKPGELR WKWIENYCWD HGCFRSQNQC NDKWDNLLRD YKKVRQYQSS  120
HSQSQSSHPF LSYWSMERHQ RKLHNLPTNM SPEVFEALND VLQRKLNTQQ QPHLHQPSFS  180
QSPEQLPLKT DQNPPEVDAP VTVSEESDSS ETESSENLDS KTKRKKVRKI GSSIMRSASV  240
LAQTLKSCEE NKEKRHQQVM ELEQRRLQIE ETRNEVNRKG ITDLVAAMTN LSGAIQSLIA  300
NHYDQT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198340.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706627.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A1U8KW220.0A0A1U8KW22_GOSHI; trihelix transcription factor ASR3-like
STRINGGorai.002G169000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-46Trihelix family protein