PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1242
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 616aa    MW: 67651.4 Da    PI: 5.8677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1242genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.33.2e-1382476061374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        + p++  +++ s++l++   f+e++P+lkf+h+ta
  Gh_A01G1242 247 LVHALMACAEAVQQNNLNLAEALVKQIGFLAISQAGAMRKVATYFAEALARRIYR--------FYPQNPLDHSFSDVLHM--HFYETCPYLKFAHFTA 334
                  689****************************************************........44555555557777777..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p++++++ l+e+g +La+fA++++v+fe++ +va++l+dl+ ++L++
  Gh_A01G1242 335 NQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPAFRLTGFGPPSHDNSDHLQEVGCKLAQFAKKIHVEFEYRGFVANSLADLDASMLDL 432
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   Ea+aVn+v++lh+ll++++++++    v ++vk+++P++v++veqea+hn++ Fl+rf+e+l++ys+lfdsle ++   s++++++++++lg+
  Gh_A01G1242 433 RPseVEAVAVNSVFELHKLLARPGAIDK----VFSVVKQMKPELVTIVEQEANHNGPVFLDRFTESLHFYSTLFDSLEGSV---SSQDKVMSEVYLGK 523
                  **8889**************99999988....************************************************7...9999********** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvaceg +r+erhe+l +Wr+rl++aGF+pv+l+++a kqa++ll+ ++ +dgy vee++g+l+lgW++rpL+++SaW+
  Gh_A01G1242 524 QICNVVACEGVDRIERHESLTQWRNRLSTAGFSPVHLGSNAFKQASMLLALFAgGDGYGVEENNGCLMLGWHNRPLITTSAWK 606
                  **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.6E-3641108IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.5E-3841114No hitNo description
PROSITE profilePS5098567.058221585IPR005202Transcription factor GRAS
PfamPF035141.1E-135247606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKRDHNHLQP NPDPSSLRGA PSTGKAKVWD EESAQQDCGM DELLAVLGYK VKTSDMAEVA  60
QKLEQLEEVM CNVQDDGISH LASETVHYNP SDLSTWLESM LSELNPPSTF DPFGAAGTAA  120
AALDDSFLVP AESSTLTTLD FDNINRKHQK SGQQIFEEAS CSDYDLKAIP GKAIYSQKTQ  180
PQTHDSSSSS TPTNVKSEKR FKSTSGPPSP SDIFPPPPPP AAASYGIPTA STRPVVLVDS  240
QENGIRLVHA LMACAEAVQQ NNLNLAEALV KQIGFLAISQ AGAMRKVATY FAEALARRIY  300
RFYPQNPLDH SFSDVLHMHF YETCPYLKFA HFTANQAILE AFEGKKRVHV IDFSMNQGMQ  360
WPALMQALAL RVGGPPAFRL TGFGPPSHDN SDHLQEVGCK LAQFAKKIHV EFEYRGFVAN  420
SLADLDASML DLRPSEVEAV AVNSVFELHK LLARPGAIDK VFSVVKQMKP ELVTIVEQEA  480
NHNGPVFLDR FTESLHFYST LFDSLEGSVS SQDKVMSEVY LGKQICNVVA CEGVDRIERH  540
ESLTQWRNRL STAGFSPVHL GSNAFKQASM LLALFAGGDG YGVEENNGCL MLGWHNRPLI  600
TTSAWKLTNK TTAISQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-6824260513377Protein SCARECROW
5b3h_D8e-6824260513377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26420.0boll| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6439690.0DQ643969.1 Gossypium barbadense DELLA protein GAI (GAI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314076.10.0DELLA protein GAIP-B-like
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A1U8KL630.0A0A1U8KL63_GOSHI; DELLA protein GAIP-B-like
TrEMBLQ155E40.0Q155E4_GOSBA; DELLA protein GAI
STRINGGorai.002G177000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein