PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1471
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 74aa    MW: 8092.41 Da    PI: 10.4287
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1471genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP661.3e-201472470
          TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70
                 +s++caa +F+L++eLG+ +d+ktieWL +qa+p ++++tg+++ ++
  Gh_A01G1471  1 MSVLCAAWIFQLTRELGHRSDGKTIEWLSRQAEPYVIAATGSGTAAP 47
                 9*****************************************66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-14143IPR005333Transcription factor, TCP
PROSITE profilePS5136918.492139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MSVLCAAWIF QLTRELGHRS DGKTIEWLSR QAEPYVIAAT GSGTAAPPSP PMRSLVPLGS  60
LQLLRLRNRV SCTQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022978800.16e-19transcription factor TCP11-like
SwissprotQ9FMX21e-17TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1U7YVF84e-17A0A1U7YVF8_NELNU; transcription factor TCP11
TrEMBLD1MJ535e-17D1MJ53_PEA; Proliferating cell nuclear antigen gene-controlling element binding factor (Fragment)
STRINGXP_010241853.17e-18(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.16e-20TCP family protein