PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1488
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 220aa    MW: 24562.6 Da    PI: 8.475
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1488genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.81.9e-15739133
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                 C +Cg  +TplWR+gp  ++ LCnaCG +yr+ 
  Gh_A01G1488  7 CFHCGIDSTPLWRNGPPEKPVLCNACGSRYRLG 39
                 ****************88888**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.6E-9160IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-11543No hitNo description
CDDcd002029.26E-15659No hitNo description
Gene3DG3DSA:3.30.50.106.5E-13739IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003203.7E-13739IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24756IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKKQGPCFHC GIDSTPLWRN GPPEKPVLCN ACGSRYRLGK PLENYIPKTL QIIQKKKRKA  60
VPKSVVTNNG NASYSSSAMG DYASSESSTA HNLNFCSIKQ ENLDDDFHPV EDLGSSWRNH  120
SRKRSAVVYN SLTTIQKLER DLQKILRHEP HLFNGVESQD DVLIYNVNIN NLQIPSKEIG  180
LGTILLNDFP VSSPSSSHHQ DEQEIKISTP NHAPTAPSYP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467721.11e-158PREDICTED: GATA transcription factor 26-like
TrEMBLA0A2P5YIN61e-162A0A2P5YIN6_GOSBA; Uncharacterized protein
STRINGGorai.002G208900.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1890268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.12e-25GATA transcription factor 26