PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1534
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 550aa    MW: 57890.2 Da    PI: 7.1636
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1534genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.5e-411712743112
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 
                  + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++       +sk+
  Gh_A01G1534 171 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------PSKS 261
                  5699****************************************************************9997777777777744444.......2222 PP

          TCP 100 sqksaasalnlak 112
                  +++  + al+la 
  Gh_A01G1534 262 APHAFHGALALAS 274
                  2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-39175275IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496176230IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MELTDLQSNN QTKNNNSSSS SNNNNNNSAE PHHQSLQQHH LQHQKQSASP QLVVPFDGTR  60
SSGPSSGNPF NMGSISHLHP HHPFHLLLHP ASSTTTTTTT PPLPSSSSSS SSSSSASTTA  120
TNPPQLVDAS LAIATRSTSH NIDSKNQTDL PLSSTTTPAS TTTTTTTANP PVKRSTKDRH  180
TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF  240
STLNISLRSS GSTLSAPPSK SAPHAFHGAL ALASHHHHHH PYEEGFAHSA LLGFQQQHLL  300
TADQIAEALP GGGGGDGGNL SENYMRKRFR EDLFKDDDQQ QGESGSGGGD GSPIKAFKSG  360
LTQLSKPQQD AGSSALPRPS NILPGTAMWA VAPAPSSGAG STFWMLPMSA GAGGPSVAPS  420
AATGAGPSDH PQMWPFGTAN QASGNTLQAP LHFLPRFNLP GNVEFQGGRA SPLQLGSMLM  480
QQQHQQQQPH HHLGLGMSDS NLGMLAALNA YSRGGSNVNS DQNNPLEHHH QQHQPQGTDS  540
GDDQDPNTSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74540.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274910.0HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711611.10.0PREDICTED: transcription factor TCP8-like isoform X1
RefseqXP_016711612.10.0PREDICTED: transcription factor TCP8-like isoform X2
RefseqXP_016711613.10.0PREDICTED: transcription factor TCP8-like isoform X1
TrEMBLA0A1U8LAH60.0A0A1U8LAH6_GOSHI; transcription factor TCP8-like isoform X1
STRINGGorai.002G215000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-60TCP family protein