PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1537
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 131aa    MW: 15153.6 Da    PI: 10.374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1537genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.3e-1515981390
                 TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                 ++r+++p k + ++     gg+    ++  ++de gr+W++++  rk+s++    vltkGW+eFv  ++L   D v F++d++  ++
  Gh_A01G1537 15 EKRMTIPSKSL-NCfpalsGGE--HMVDFDVRDECGRVWKFRIYTRKSSNKyrkPVLTKGWREFVCRKELSIDDKVAFYMDKQqADG 98
                 3579******9.4559996555..567999*************667777776779************************88654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00214110IPR003340B3 DNA binding domain
CDDcd100171.76E-14493No hitNo description
Gene3DG3DSA:2.40.330.102.5E-16495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14593IPR015300DNA-binding pseudobarrel domain
PfamPF023626.7E-121697IPR003340B3 DNA binding domain
PROSITE profilePS508639.33342110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MATIVKKRLR KTDIEKRMTI PSKSLNCFPA LSGGEHMVDF DVRDECGRVW KFRIYTRKSS  60
NKYRKPVLTK GWREFVCRKE LSIDDKVAFY MDKQQADGSV EYRVTVQKAV KVFGAVFAHK  120
PFPGEASNDI V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.35891e-177ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738612281e-177
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467821.11e-88PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A2P5VYY26e-92A0A2P5VYY2_GOSBA; Uncharacterized protein
STRINGGorai.002G215500.15e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-10B3 family protein