PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1562
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 423aa    MW: 46907.9 Da    PI: 7.875
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1562genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.47.8e-101759440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Gh_A01G1562 17 RACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHKRV 59
                 78*****************************668888889887 PP
2CCT68.12.4e-23367410144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Gh_A01G1562 367 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 410
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8081461IPR000315B-box-type zinc finger
SMARTSM003364.4E-111461IPR000315B-box-type zinc finger
CDDcd000212.70E-111761No hitNo description
PfamPF006431.1E-71759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.083367409IPR010402CCT domain
PfamPF062037.1E-18367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MISSKKMANA VGAKTVRACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHKRVR  60
LKTASVKSSG DELPLESFSP TWDRGFTRKA RTRRPVKGSI HRKLLKAKNN PVPVVPEVGI  120
DELFNEENEE EQLLYRVPIF DPFVAELCTS TTSTEAAVSA VGNEAESTAT ESKAFLGQDV  180
DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFTMVELGL TGSKDKDLRE YSYGNGQVKI  240
EDEESFEGGM GREPFEFSFN YDSPPSCGGV DELVKEEVAM KSKEDGECQE NTAKKKKRKT  300
LLSLDYEAVI TAWATQGSPW TSGGKPDLDP DECWPDCMRN GGTEVQQSYS GLIGMGGQQQ  360
AMGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA SFLAGPAFPL  420
LNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298KKKKRK
2377393RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.218870.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183350.0JQ618335.1 Gossypium hirsutum constans-like protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629159.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-106COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1U8LA590.0A0A1U8LA59_GOSHI; zinc finger protein CONSTANS-LIKE 16-like isoform X1
TrEMBLA0A2P5Y4S30.0A0A2P5Y4S3_GOSBA; Uncharacterized protein
STRINGGorai.002G218400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-100B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]