PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1783
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 18828.1 Da    PI: 5.6782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1783genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-182070155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + ykGVr++  +g+Wv+eIr+       + +r++lg+f t+e+Aa a++ a+++l+g
  Gh_A01G1783 20 PVYKGVRRRA-NGKWVSEIRErR-----KpTRIWLGTFPTPEMAAIAYDVAALALKG 70
                 68*****887.8*********33.....58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-132070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-292180IPR001471AP2/ERF domain
PROSITE profilePS5103221.472178IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-202180IPR016177DNA-binding domain
SMARTSM003808.7E-322184IPR001471AP2/ERF domain
CDDcd000182.89E-302280No hitNo description
PRINTSPR003671.0E-72233IPR001471AP2/ERF domain
PRINTSPR003671.0E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQYNKGYSSG GGSAATGRHP VYKGVRRRAN GKWVSEIRER RKPTRIWLGT FPTPEMAAIA  60
YDVAALALKG PHAELNFPNS AASLPVPAST SPTDIQAAAT SAATALGAAN DALVGSNNPV  120
SAERPSTGND FVDEDMMFDM PNVLVNMAEG MLLSPPRFDH PLPADDSGDS ENLWKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151180474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684692.11e-128PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR07e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1U8J2Y81e-126A0A1U8J2Y8_GOSHI; ethylene-responsive transcription factor ERF024-like
STRINGGorai.002G241800.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-46ERF family protein