PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1819
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 290aa    MW: 31495.2 Da    PI: 7.7916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1819genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028189211123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Gh_A01G1819 189 HECSICGAGFSSGQALGGHMRRH 211
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.9E-10121146IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-6121144No hitNo description
PROSITE profilePS501578.767122149IPR007087Zinc finger, C2H2
SMARTSM003550.45122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-6184211No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4185211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-12188212IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743189211IPR007087Zinc finger, C2H2
SMARTSM003550.017189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEGQDDDGVC CKDDDHQLQI IKGKRTKRPR APPSSPPLTS VVASTTTTTT SSGGGGGAVG  60
VSPTITTSFD LAESSTEEEE EREQDMANCL LLLSQGQTRK VKPPSPPPSE PSTAAAVETD  120
VHQCKTCNRC FPSFQALGGH RASHKKFKVV NDQDINNNHN KEDHRHYDQF NEMATTLSLH  180
ITSKKPRVHE CSICGAGFSS GQALGGHMRR HRTLTNAPTT KTPATATTTL DTVVRTSEQR  240
KKPRTVLQLD LNLPAPEDDL HKEPNNKVLS FASKGKLLVF SASSLVDCHY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165670.0JX616567.1 Gossypium hirsutum clone NBRI_GE61324 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622121.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5RTB51e-148A0A2P5RTB5_GOSBA; Uncharacterized protein
STRINGGorai.002G245800.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2427934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-37C2H2 family protein